{"id":"W2294646823","doi":"10.1128/jcm.00198-16","title":"Mycobacterium arupense, Mycobacterium heraklionense, and a Newly Proposed Species, “Mycobacterium virginiense” sp. nov., but Not Mycobacterium nonchromogenicum, as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"Amon G. Carter Foundation","keywords":"Microbiology; Tenosynovitis; Mycobacterium; Biology; Nontuberculous mycobacteria; Mycobacterium marinum; Clarithromycin; Mycobacterium abscessus; rpoB; Antibiotics; 16S ribosomal RNA; Bacteria; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004493112,0.0004192061,0.0002133515,0.0007143373,0.0006095901,0.000719437,0.000577566,0.0005588564,0.001096696],"category_scores_gemma":[0.0008744673,0.0002135855,0.000261922,0.0003916365,0.0003787256,0.0005622599,0.0005454807,0.0004353744,0.0001769833],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004243768,"about_ca_system_score_gemma":0.0005117116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008653451,"about_ca_topic_score_gemma":0.01676885,"domain_scores_codex":[0.9995436,0.00005954344,0.00006339805,0.0001363803,0.000108428,0.00008865215],"domain_scores_gemma":[0.999493,0.00008788737,0.0001775861,0.00007457282,0.0001053486,0.00006160956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006624536,0.0003561209,0.6555288,0.0006277059,0.0001683183,0.009884967,0.001677553,0.0004596143,0.2404346,0.001027049,0.0005484185,0.08862439],"study_design_scores_gemma":[0.00004184125,0.0007078963,0.9210719,0.0002225554,0.000181393,0.02501268,0.002560407,0.001179491,0.03720476,0.0004216915,0.0113572,0.00003815216],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936928,0.002177655,0.0004355513,0.0001023106,0.00003816716,0.00003926734,0.000119412,0.00001078904,0.00338414],"genre_scores_gemma":[0.9970201,0.000542206,0.001075612,0.00006230182,0.00002154388,0.00001171504,0.0004298945,0.000001837925,0.0008348852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008653451,"threshold_uncertainty_score":0.01720619,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04831680259470141,"score_gpt":0.3174407260892437,"score_spread":0.2691239234945423,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}