{"id":"W2294646823","doi":"10.1128/jcm.00198-16","title":"Mycobacterium arupense, Mycobacterium heraklionense, and a Newly Proposed Species, “Mycobacterium virginiense” sp. nov., but Not Mycobacterium nonchromogenicum, as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"Amon G. Carter Foundation","keywords":"Microbiology; Tenosynovitis; Mycobacterium; Biology; Nontuberculous mycobacteria; Mycobacterium marinum; Clarithromycin; Mycobacterium abscessus; rpoB; Antibiotics; 16S ribosomal RNA; Bacteria; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.002858188,0.001376963,0.004379916,0.000747367,0.0004318852,0.0003050227,0.0009252992,0.001290915,0.001946326],"category_scores_gemma":[0.006122238,0.0008526321,0.001467507,0.0007422238,0.00405156,0.0008500871,0.001408549,0.001915359,0.00009354966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003934324,"about_ca_system_score_gemma":0.001645991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002555876,"about_ca_topic_score_gemma":0.0001744899,"domain_scores_codex":[0.9880924,0.001763854,0.005656687,0.00161023,0.0008310576,0.002045804],"domain_scores_gemma":[0.9862721,0.003707449,0.004452254,0.001670084,0.002249757,0.001648343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006775398,0.0004941555,0.1436498,0.0005641619,0.0008160569,0.0006709746,0.0002626437,1.38512e-7,0.8389175,0.00006927367,0.004142355,0.003637605],"study_design_scores_gemma":[0.01078845,0.004829855,0.7436752,0.001704317,0.0007191957,0.01586241,0.000244251,0.000003494536,0.1043149,0.00006867076,0.1169,0.0008892136],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9737748,0.0006122802,0.00008789276,0.01716539,0.004382299,0.001544251,0.001727562,0.00008027834,0.0006252665],"genre_scores_gemma":[0.9817669,0.006230013,0.001681775,0.00297167,0.004760314,0.00002251135,0.0001360442,0.0001894633,0.002241308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7346026,"threshold_uncertainty_score":0.9998981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04831680259470141,"score_gpt":0.3174407260892437,"score_spread":0.2691239234945423,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}