{"id":"W2294668836","doi":"10.1371/journal.pone.0150397","title":"Rapid HIV-1 Disease Progression in Individuals Infected with a Virus Adapted to Its Host Population","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; AIDS Vancouver","funders":"Japan Society for the Promotion of Science; Michael Smith Health Research BC","keywords":"Population; Biology; Human leukocyte antigen; Allele; Genetics; Immunology; Immunity; Virology; Immune system; Antigen; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001798283,0.000153431,0.0001592699,0.000410248,0.0003578083,0.000404738,0.00009325142,0.0002146893,0.0007824812],"category_scores_gemma":[0.0003102598,0.00008159166,0.0001176057,0.0002875775,0.0001684188,0.0002026047,0.0002056514,0.0002956742,0.00009769099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001284601,"about_ca_system_score_gemma":0.0001393049,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001679851,"about_ca_topic_score_gemma":0.002527566,"domain_scores_codex":[0.9999251,0.0000166603,0.000005436199,0.00002558974,0.00001218252,0.00001502548],"domain_scores_gemma":[0.9998589,0.00001722076,0.00005918173,0.00001256943,0.00001786316,0.00003426371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002306529,0.0001170118,0.9266942,0.00002745885,0.00002919695,0.000525349,0.0003179777,0.0001312681,0.06097434,0.0000720804,0.00006863683,0.01081194],"study_design_scores_gemma":[0.000003440866,0.0003774143,0.9922954,0.000007107047,0.00003231523,0.001849758,0.000477275,0.0004197879,0.004067312,0.00008131559,0.0003824167,0.000006439225],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993772,0.0001025788,0.0001522212,0.00001260786,0.000001714764,0.000006670781,0.00003008201,0.000003184496,0.0003137913],"genre_scores_gemma":[0.9994071,0.00007110869,0.0002775098,0.00001539516,0.0000028831,0.000003732714,0.0000417282,8.367575e-7,0.0001797901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001679851,"threshold_uncertainty_score":0.003340125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0339639444549332,"score_gpt":0.2625660243762388,"score_spread":0.2286020799213056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}