{"id":"W2296560393","doi":"10.1371/journal.pone.0150908","title":"Population Structure and Antimicrobial Resistance Profiles of Streptococcus suis Serotype 2 Sequence Type 25 Strains","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; University of Toronto; McGill University and Génome Québec Innovation Centre; Public Health Ontario","funders":"University of Toronto; Génome Québec; McGill University","keywords":"Multilocus sequence typing; Biology; Streptococcus suis; Serotype; Phylogenetic tree; Genetics; Genetic diversity; Whole genome sequencing; Genome; Horizontal gene transfer; Clade; Phylogenetics; Population; Phylogenetic diversity; Gene; Microbiology; Genotype; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002515303,0.0001014869,0.000218665,0.00005682781,0.00004389429,0.00000668032,0.00002701821,0.00007361582,0.000233969],"category_scores_gemma":[0.00008485189,0.0000675967,0.00002375007,0.0001337353,0.00006826959,0.00007606071,0.00001612053,0.00005337437,0.000006668206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004648789,"about_ca_system_score_gemma":0.00003528344,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007431915,"about_ca_topic_score_gemma":0.00009713436,"domain_scores_codex":[0.9993709,0.00001809546,0.0001649673,0.0001931983,0.0001289549,0.0001239071],"domain_scores_gemma":[0.9994896,0.00002429614,0.00008494384,0.0001935479,0.0001479948,0.00005961015],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005508314,0.00020698,0.620249,0.0001192195,0.000115859,0.00000350628,0.00001699841,8.674701e-8,0.3784805,0.0001914328,0.00003270593,0.000528621],"study_design_scores_gemma":[0.0008731324,0.000216675,0.7665474,0.0006750584,0.0001497535,0.000002797395,0.000004644558,0.000003862833,0.2312025,0.0002392495,0.00001247643,0.00007242848],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986079,0.00004770538,0.000006086573,0.0002269378,0.00002573747,0.0005815899,0.0001745777,0.00003756039,0.0002919576],"genre_scores_gemma":[0.9972589,0.00004865103,0.001639073,0.00001797492,0.00005751297,0.00001146929,0.00004821791,0.00001253061,0.0009056767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.147278,"threshold_uncertainty_score":0.2756514,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04878245398740551,"score_gpt":0.2796675630682436,"score_spread":0.2308851090808381,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}