{"id":"W2296560393","doi":"10.1371/journal.pone.0150908","title":"Population Structure and Antimicrobial Resistance Profiles of Streptococcus suis Serotype 2 Sequence Type 25 Strains","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; University of Toronto; McGill University and Génome Québec Innovation Centre; Public Health Ontario","funders":"University of Toronto; Génome Québec; McGill University","keywords":"Multilocus sequence typing; Biology; Streptococcus suis; Serotype; Phylogenetic tree; Genetics; Genetic diversity; Whole genome sequencing; Genome; Horizontal gene transfer; Clade; Phylogenetics; Population; Phylogenetic diversity; Gene; Microbiology; Genotype; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002435157,0.0002487075,0.0001830781,0.0009791763,0.0001886296,0.000461152,0.0001643046,0.0002705153,0.0008275033],"category_scores_gemma":[0.0005666772,0.0001098663,0.0002216866,0.0005577948,0.0002239566,0.0001498527,0.0001984014,0.0001588704,0.0001454294],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002247901,"about_ca_system_score_gemma":0.0001784757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004101193,"about_ca_topic_score_gemma":0.003841447,"domain_scores_codex":[0.9996495,0.00005310399,0.00002687976,0.0001540549,0.00004882702,0.00006753446],"domain_scores_gemma":[0.9997118,0.00004594936,0.0001057522,0.00002377473,0.00005119856,0.00006151595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003127842,0.0000628839,0.9465506,0.00001722196,0.00009463942,0.0001951877,0.0006444343,0.000341475,0.04624569,0.00009902069,0.00008509782,0.005350885],"study_design_scores_gemma":[0.000005301742,0.0002299258,0.9966993,0.000005758917,0.00002279039,0.000320433,0.0005416342,0.0006021281,0.00131467,0.00002970358,0.0002205053,0.000007841911],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997188,0.00003984342,0.00007017831,0.000002348536,7.707521e-7,0.000002480752,0.00007472566,0.000001123429,0.00008973051],"genre_scores_gemma":[0.9993879,0.00003685838,0.00009550148,0.000005434356,0.000001872124,0.000004008468,0.0003786447,0.000001132948,0.00008868162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004101193,"threshold_uncertainty_score":0.008154631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04878245398740551,"score_gpt":0.2796675630682436,"score_spread":0.2308851090808381,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}