{"id":"W2297442822","doi":"10.1128/jb.00839-15","title":"The SOS Response Master Regulator LexA Regulates the Gene Transfer Agent of Rhodobacter capsulatus and Represses Transcription of the Signal Transduction Protein CckA","year":2016,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Repressor lexA; Biology; Mutant; Rhodobacter; Genetics; Gene; Plasmid; Reporter gene; Homologous recombination; Repressor; Transcription factor; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001030682,0.0007583278,0.0002344095,0.000219924,0.000166423,0.0002540353,0.0002866392,0.0003058457,0.001050277],"category_scores_gemma":[0.000150975,0.0001497404,0.0002363293,0.00009914175,0.0003007912,0.0001722242,0.0003548159,0.0004379061,0.0009020529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004973573,"about_ca_system_score_gemma":0.0003461218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001162991,"about_ca_topic_score_gemma":0.000915592,"domain_scores_codex":[0.9998543,0.00001508739,0.00001024832,0.00004042909,0.00004620372,0.00003358152],"domain_scores_gemma":[0.9998092,0.00002237376,0.00007524167,0.0000200377,0.00002822609,0.00004490028],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002699191,0.000007435175,0.0001797932,0.00001399321,7.424033e-7,0.00001972326,0.00000426401,0.00002774503,0.999278,0.0000232123,0.000009540756,0.0004085873],"study_design_scores_gemma":[0.000005095791,0.00008954055,0.005941064,0.000004530155,0.000004835819,0.0001378089,0.00002615032,0.0004923496,0.9925132,0.0000183684,0.000763506,0.000003585258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946311,0.0009379265,0.002736657,0.0001144464,0.0000156823,0.00002907669,0.0003256337,0.0002509314,0.0009585755],"genre_scores_gemma":[0.9935641,0.000419725,0.002199278,0.00003505544,0.000008537893,0.00003439479,0.0007476615,0.00004673187,0.002944501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001162991,"threshold_uncertainty_score":0.003608584,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0110220197004607,"score_gpt":0.2047866231341995,"score_spread":0.1937646034337387,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}