{"id":"W2297458225","doi":"10.1007/s10482-016-0660-2","title":"A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov.","year":2016,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Polyphyly; Biology; Monophyly; Phylogenetic tree; Archaea; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009846457,0.000404869,0.0003777884,0.00174874,0.0006148457,0.001042886,0.0003529594,0.0004525242,0.001197617],"category_scores_gemma":[0.001231889,0.00019711,0.0004923285,0.00186581,0.0003610207,0.0008675251,0.0005928614,0.001075428,0.0004829068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005742189,"about_ca_system_score_gemma":0.0008630608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003189036,"about_ca_topic_score_gemma":0.004914629,"domain_scores_codex":[0.9997075,0.00006508334,0.00001770302,0.00009566322,0.00005325913,0.0000607048],"domain_scores_gemma":[0.9993731,0.0001043077,0.0001074767,0.0001081106,0.0001852022,0.0001217859],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001075377,0.0001795154,0.1862356,0.0007246742,0.0005681964,0.000496871,0.002666777,0.002379844,0.4809866,0.004978016,0.003885687,0.3158228],"study_design_scores_gemma":[0.00004161177,0.0004710829,0.9157643,0.0004689989,0.0005062995,0.001019074,0.002535593,0.009419268,0.01981179,0.006284592,0.04360325,0.00007415186],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9368916,0.02373261,0.02428684,0.004840522,0.0001954546,0.00008023476,0.00381982,0.0001932549,0.005959642],"genre_scores_gemma":[0.9570765,0.009486833,0.02580552,0.000972258,0.0000774447,0.00005650004,0.004483774,0.00007506034,0.001966108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003189036,"threshold_uncertainty_score":0.006340921,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01220045940705268,"score_gpt":0.2451233307870528,"score_spread":0.2329228713800001,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}