{"id":"W2297900144","doi":"10.1534/g3.115.021022","title":"RNAseq Analysis Highlights Specific Transcriptome Signatures of Yeast and Mycelial Growth Phases in the Dutch Elm Disease Fungus<i>Ophiostoma novo-ulmi</i>","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Ministère des Ressources naturelles et des Forêts","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Sherbrooke; Université du Québec à Rimouski; Université Laval; Ohio State University","keywords":"Biology; Dutch elm disease; Ophiostoma; Transcriptome; Dimorphic fungus; Fungus; Mycelium; Gene; Yeast; Pathogenic fungus; Candida albicans; Genetics; Genome; Fungal protein; Gene expression; Botany; Saccharomyces cerevisiae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001038794,0.0002131986,0.0002501641,0.0002894083,0.0001676396,0.0003909177,0.00009558448,0.0002224594,0.0006939565],"category_scores_gemma":[0.0001890745,0.0001092415,0.0002875962,0.0003081479,0.0002123927,0.0001825296,0.0002408001,0.0004144463,0.0002755341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001685091,"about_ca_system_score_gemma":0.000174747,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009883755,"about_ca_topic_score_gemma":0.001317723,"domain_scores_codex":[0.9998555,0.00001016972,0.000008311306,0.00006851737,0.00002606831,0.00003130477],"domain_scores_gemma":[0.9998586,0.0000524619,0.0000356538,0.00001282639,0.00001937782,0.00002096313],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004448506,0.000003527359,0.0008675503,0.00001853306,0.00000326934,0.0000203931,0.00002642136,0.00002482173,0.9982516,0.00001186198,0.00001668968,0.0007108185],"study_design_scores_gemma":[0.00001811518,0.0002755115,0.4401484,0.00002230395,0.00005814021,0.0008845624,0.0005243916,0.003051627,0.5495992,0.0002392147,0.005148202,0.00003042843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884403,0.000725809,0.004755155,0.00007918417,0.00001059299,0.00002250392,0.005085951,0.0001006136,0.0007798435],"genre_scores_gemma":[0.9774155,0.0006207463,0.008890993,0.0001965065,0.0000122006,0.00008382758,0.01064637,0.00009841188,0.002035441],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009883755,"threshold_uncertainty_score":0.002321482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01427094399398272,"score_gpt":0.2177839293979543,"score_spread":0.2035129854039716,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}