{"id":"W2298663188","doi":"10.1261/rna.054924.115","title":"Topology of RNA–protein nucleobase–amino acid π–π interactions and comparison to analogous DNA–protein π–π contacts","year":2016,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Western Canada Research Grid; Compute Canada; University of Lethbridge","keywords":"RNA; Nucleobase; Nucleic acid; Biology; DNA; Amino acid; Nucleic acid structure; Intermolecular force; Protein structure; Biochemistry; Crystallography; Biophysics; Computational biology; Molecule; Chemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001712286,0.0001771283,0.0002757893,0.00007732305,0.00007152672,0.00001410851,0.0001912088,0.0001487835,0.0001627371],"category_scores_gemma":[0.0001583007,0.0001374753,0.00007668794,0.00006676257,0.00008829543,0.000007879611,0.0001304556,0.00006023246,0.00004317818],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001813714,"about_ca_system_score_gemma":0.00003748373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000809719,"about_ca_topic_score_gemma":0.0001241845,"domain_scores_codex":[0.9988406,0.0001156121,0.0003025996,0.000361683,0.0001096869,0.0002698555],"domain_scores_gemma":[0.9992097,0.00002072424,0.0001474818,0.0003880996,0.00007905269,0.0001549104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001827293,0.00005608253,0.0001219759,0.0000152367,0.00004607764,0.000003918874,0.00004582944,5.228207e-7,0.9601153,0.000944335,0.0004325756,0.03803545],"study_design_scores_gemma":[0.0003703226,0.0006151414,0.000448341,0.00008710092,0.00001520029,0.0000107239,0.00007505029,0.000002581883,0.9773527,0.0003919444,0.020446,0.0001848838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849591,0.0002935394,0.01142045,0.001236481,0.0001275577,0.0003967865,0.00004089077,0.00001598697,0.001509236],"genre_scores_gemma":[0.9956488,0.00002086711,0.002301166,0.0001965047,0.0001540792,0.00006046834,0.000008218306,0.00002305761,0.001586827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03785057,"threshold_uncertainty_score":0.5606081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01527049813997453,"score_gpt":0.267169096524533,"score_spread":0.2518985983845585,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}