{"id":"W2299040622","doi":"10.1089/fpd.2015.2066","title":"The Impact of Multilocus Variable-Number Tandem-Repeat Analysis on PulseNet Canada <i>Escherichia coli</i> O157:H7 Laboratory Surveillance and Outbreak Support, 2008–2012","year":2016,"lang":"en","type":"article","venue":"Foodborne Pathogens and Disease","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Public Health Agency of Canada","keywords":"Multiple Loci VNTR Analysis; Pulsed-field gel electrophoresis; Variable number tandem repeat; Outbreak; Biology; Genetics; Virology; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002600882,0.0002324723,0.0002605877,0.00002979032,0.0001412775,0.00004809764,0.0001492195,0.00007673394,0.00009258998],"category_scores_gemma":[0.0001108947,0.0001355145,0.0001190595,0.0001905298,0.0001481466,0.00001017887,0.0001261706,0.00005969426,0.000001872828],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003323137,"about_ca_system_score_gemma":0.0006204956,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.008031938,"about_ca_topic_score_gemma":0.03423299,"domain_scores_codex":[0.9985378,0.0001936073,0.0002476542,0.000429785,0.0001908878,0.0004001986],"domain_scores_gemma":[0.9985777,0.0000636271,0.0001105842,0.0005370997,0.000163027,0.000547919],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000755287,0.0001156537,0.7781813,0.00002174262,0.0006395115,0.00002197544,0.000008360113,0.00001923289,0.2134764,0.00002340614,0.005048131,0.001689026],"study_design_scores_gemma":[0.001390583,0.0004047673,0.9751714,0.00001965082,0.0002022107,0.000005162832,0.00003087584,0.00003734368,0.006658852,0.00002756559,0.01568063,0.0003709048],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944366,0.00105676,0.00008250233,0.0001461949,0.00004706339,0.0001686187,0.003869402,0.000005835431,0.0001870563],"genre_scores_gemma":[0.9982786,0.000772515,0.00002711916,0.0001247462,0.00007594196,0.00002538802,0.0001830168,0.00002203741,0.0004906214],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2068175,"threshold_uncertainty_score":0.9985737,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00497548090460669,"score_gpt":0.2386110256813229,"score_spread":0.2336355447767162,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}