{"id":"W2299066600","doi":"10.1007/s40610-016-0028-4","title":"Spatial Organization of Epigenomes","year":2016,"lang":"en","type":"article","venue":"Current Molecular Biology Reports","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Chromatin; Spatial organization; Computational biology; Biology; Genomic organization; DNA; Chromosome conformation capture; Regulation of gene expression; Genetics; Genome; Gene; Transcription factor; Evolutionary biology; Enhancer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001212879,0.00013469,0.000158377,0.00004349188,0.00003043768,0.000004126755,0.0001150932,0.0001342997,0.00003542512],"category_scores_gemma":[0.0001790577,0.000100409,0.00007688098,0.0000734413,0.0001146837,0.000001484565,0.0001344643,0.00003234235,0.00000485618],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001229191,"about_ca_system_score_gemma":0.00009435107,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005061893,"about_ca_topic_score_gemma":0.000003323085,"domain_scores_codex":[0.9990212,0.00004550488,0.000347291,0.0003446696,0.00006042102,0.0001809393],"domain_scores_gemma":[0.9990582,0.000005398717,0.0002721742,0.0004352284,0.000173869,0.00005513089],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000003945901,0.00004138726,0.09736046,0.00001021009,0.00003332867,0.000007047669,0.000006566161,0.000004266331,0.8888655,0.0003518795,0.0000952695,0.01322013],"study_design_scores_gemma":[0.0003303961,0.0001747599,0.01241772,0.00002534453,0.00003044252,0.0001254927,0.000005085556,0.000006688724,0.9683093,0.001635051,0.01667308,0.0002666739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8632944,0.0008401743,0.1348901,0.0000603978,0.0006220547,0.0001179023,0.00001720496,0.00001015379,0.0001476313],"genre_scores_gemma":[0.9988034,0.0002848842,0.0004453158,0.00002178579,0.0001079731,0.000006516225,0.0002587661,0.00002305797,0.00004827083],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.135509,"threshold_uncertainty_score":0.409456,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005120194241307666,"score_gpt":0.2447410839617678,"score_spread":0.2396208897204602,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}