{"id":"W2302035455","doi":"10.1128/genomea.01748-15","title":"Draft Genome Sequence of “ <i>Acidibacillus ferrooxidans</i> ” ITV01, a Novel Acidophilic Firmicute Isolated from a Chalcopyrite Mine Drainage Site in Brazil","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministério da Ciência, Tecnologia e Inovação; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Vale Canada Limited","keywords":"Chalcopyrite; Whole genome sequencing; Biology; Sequence (biology); Genome; Genetics; Gene; Metallurgy; Copper; Materials science","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003780649,0.001334677,0.001096983,0.001375486,0.0007800199,0.001200849,0.0008128072,0.0008818683,0.001912137],"category_scores_gemma":[0.001817422,0.0005002083,0.001290125,0.002620177,0.0002779353,0.0005132718,0.0006631097,0.001446162,0.00123695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00095718,"about_ca_system_score_gemma":0.002790461,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02094074,"about_ca_topic_score_gemma":0.01656935,"domain_scores_codex":[0.999693,0.00003113024,0.00004407856,0.0001009981,0.00007101612,0.00005970947],"domain_scores_gemma":[0.9991747,0.0001442004,0.0002516288,0.00007649219,0.0002435133,0.0001095423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001803271,0.0001826889,0.01274079,0.002763818,0.0002950502,0.00179058,0.001229934,0.002375033,0.936243,0.001076274,0.009299914,0.03019953],"study_design_scores_gemma":[0.0009373023,0.001757862,0.2963314,0.002015972,0.003882362,0.00576915,0.00396714,0.01218055,0.2419906,0.003777336,0.4269683,0.000422114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5177134,0.009455098,0.03421298,0.002212825,0.0008990823,0.0005560979,0.4253604,0.001543511,0.008046584],"genre_scores_gemma":[0.2145646,0.004291236,0.03820857,0.0002891636,0.00009858567,0.0003068789,0.7382882,0.0004794365,0.003473285],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02094074,"threshold_uncertainty_score":0.04163772,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02243880390726109,"score_gpt":0.2404857761182085,"score_spread":0.2180469722109474,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}