{"id":"W2302035455","doi":"10.1128/genomea.01748-15","title":"Draft Genome Sequence of “ <i>Acidibacillus ferrooxidans</i> ” ITV01, a Novel Acidophilic Firmicute Isolated from a Chalcopyrite Mine Drainage Site in Brazil","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministério da Ciência, Tecnologia e Inovação; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Vale Canada Limited","keywords":"Chalcopyrite; Whole genome sequencing; Biology; Sequence (biology); Genome; Genetics; Gene; Metallurgy; Copper; Materials science","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003072247,0.0003667003,0.0004537065,0.0002685471,0.0000660329,0.0000383544,0.0003573625,0.0001418655,0.0003911929],"category_scores_gemma":[0.00002873876,0.0003062023,0.000120958,0.000486371,0.00007204874,0.0004468368,0.0001042191,0.0002092879,0.0002405601],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002595618,"about_ca_system_score_gemma":0.00003222707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003021884,"about_ca_topic_score_gemma":0.000169817,"domain_scores_codex":[0.9978636,0.00004210895,0.0007015974,0.0004722844,0.0003522109,0.0005682338],"domain_scores_gemma":[0.9991081,0.00004355978,0.0001504065,0.0004741209,0.00007320601,0.0001506208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006204305,0.00009296283,0.0004915715,0.00005771331,0.0001018167,0.00002933889,0.0007754091,0.0005078415,0.9959127,0.000009615062,0.00003698764,0.001921966],"study_design_scores_gemma":[0.01805294,0.001013117,0.115664,0.001401676,0.0002568977,0.0001148577,0.0004436403,0.0299827,0.03134438,0.0006602905,0.7965006,0.004564943],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842179,0.0007648264,0.008819356,0.0002690875,0.0004120857,0.0004157443,0.002539796,0.0001788437,0.002382379],"genre_scores_gemma":[0.9970088,0.0002949929,0.0006194655,0.0004252241,0.0001073306,0.0000300194,0.00048701,0.0000488831,0.0009782593],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9645684,"threshold_uncertainty_score":0.999939,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02243880390726109,"score_gpt":0.2404857761182085,"score_spread":0.2180469722109474,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}