{"id":"W2302395337","doi":"10.1186/s12864-016-2499-3","title":"Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; University of Saskatchewan","funders":"Saskatchewan Pulse Growers","keywords":"Biology; Phaseolus; Genetics; Single-nucleotide polymorphism; Genome; SNP genotyping; Domestication; SNP array; Gene; Genotype; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002079978,0.0001366134,0.0003031801,0.00003993415,0.0003127123,0.00005144862,0.0001307269,0.00007430421,0.000006559542],"category_scores_gemma":[0.000007452179,0.00005269468,0.00009031796,0.0001770261,0.00006931643,0.00009476821,0.0001513495,0.0000389369,8.903812e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004838063,"about_ca_system_score_gemma":0.00000943281,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002638793,"about_ca_topic_score_gemma":0.02970472,"domain_scores_codex":[0.9991502,0.00005640988,0.000168836,0.0003191446,0.00007779354,0.0002275742],"domain_scores_gemma":[0.9994817,0.0002727898,0.0000920501,0.0000541079,0.00001887851,0.0000804866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002217444,0.00006696482,0.3165379,0.00001262638,0.00007778159,0.000006773645,0.0001588834,0.00003420806,0.6786468,0.0001910484,0.00003547271,0.004009848],"study_design_scores_gemma":[0.00109448,0.0002054668,0.9606576,0.00003254296,0.0002192734,0.000003923838,0.0009017117,0.00262741,0.03187507,0.0007543981,0.001182611,0.0004455341],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944715,0.0002177491,0.003712311,0.0001285541,0.00003353798,0.0002586274,0.001126067,0.00001379835,0.00003783458],"genre_scores_gemma":[0.9983053,0.00009245904,0.00125424,0.00007427239,0.00004359542,0.000007854014,0.0001203389,7.244384e-7,0.0001011876],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6467717,"threshold_uncertainty_score":0.9880006,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05895419294630325,"score_gpt":0.2349665632031038,"score_spread":0.1760123702568006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}