{"id":"W2302395337","doi":"10.1186/s12864-016-2499-3","title":"Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; University of Saskatchewan","funders":"Saskatchewan Pulse Growers","keywords":"Biology; Phaseolus; Genetics; Single-nucleotide polymorphism; Genome; SNP genotyping; Domestication; SNP array; Gene; Genotype; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004605888,0.0003158784,0.0004737204,0.000856766,0.0003630864,0.0004565043,0.000313594,0.0003605115,0.0007189699],"category_scores_gemma":[0.0005576244,0.0001694151,0.0007377111,0.001040027,0.0001949925,0.0001230173,0.0004911843,0.0004211861,0.0002563873],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002951664,"about_ca_system_score_gemma":0.000326739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001638273,"about_ca_topic_score_gemma":0.005429155,"domain_scores_codex":[0.9995634,0.00003850647,0.00002054583,0.0002431195,0.00008944394,0.00004501253],"domain_scores_gemma":[0.9996659,0.00009074921,0.00008800146,0.00003245154,0.00006740257,0.00005553179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003424684,0.00005874642,0.02115078,0.000227353,0.0001446875,0.0002939737,0.0002923119,0.0006409064,0.9607636,0.0002652242,0.0002353533,0.01558453],"study_design_scores_gemma":[0.000147568,0.0007243106,0.7608877,0.00008924458,0.0006153003,0.002417561,0.0004114037,0.01319536,0.200756,0.0008784237,0.01981395,0.00006310832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9714962,0.001025716,0.01935849,0.00006658541,0.0000243848,0.0001050742,0.006213783,0.000262727,0.001446938],"genre_scores_gemma":[0.9406385,0.0003149943,0.04230954,0.0001163374,0.00001883794,0.000175781,0.01498252,0.0001227341,0.001320743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001638273,"threshold_uncertainty_score":0.003257513,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05895419294630325,"score_gpt":0.2349665632031038,"score_spread":0.1760123702568006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}