{"id":"W2306316576","doi":"10.1016/j.mimet.2016.03.009","title":"Detection of virulence, antibiotic resistance and toxin (VAT) genes in Campylobacter species using newly developed multiplex PCR assays","year":2016,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"Institut National de la Recherche Scientifique; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Amplicon; Campylobacter; Primer (cosmetics); Biology; Microbiology; Multiplex polymerase chain reaction; Virulence; Campylobacter jejuni; Polymerase chain reaction; Gene; Antibiotic resistance; Tetracycline; Bacteria; Antibiotics; Genetics; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002455946,0.0001923616,0.0006468932,0.00005630596,0.00006573756,0.00001598113,0.0002581551,0.0002776604,0.00006927724],"category_scores_gemma":[0.001119013,0.00006065856,0.0001470751,0.0003125904,0.0002608804,0.0001319454,0.00009791782,0.0001843039,0.000001429927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006815112,"about_ca_system_score_gemma":0.00001650851,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000345097,"about_ca_topic_score_gemma":0.0001896802,"domain_scores_codex":[0.9970438,0.001403547,0.0008774089,0.0002756294,0.00007969797,0.0003198506],"domain_scores_gemma":[0.9971321,0.001900097,0.0006583105,0.00005916042,0.0001611055,0.00008917904],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001848172,0.00004195499,0.07094798,0.000006522755,0.00001590613,0.000007451411,0.00001665155,0.000001513092,0.8361444,0.00001673009,0.00001207478,0.09260391],"study_design_scores_gemma":[0.0003519944,0.000256769,0.6275755,0.0001276679,0.00001534966,0.0001125981,0.00008803671,0.000005522169,0.3661461,0.000524278,0.004643487,0.0001527598],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941606,0.001529006,0.003540074,0.0003562128,0.0002291118,0.0001035477,0.00001725171,0.000008674837,0.00005551999],"genre_scores_gemma":[0.9379289,0.001089743,0.06062452,0.0001125651,0.000160401,5.63283e-7,9.646384e-7,0.000001448881,0.00008088777],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5566275,"threshold_uncertainty_score":0.2473584,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08054600393820364,"score_gpt":0.3162673137766093,"score_spread":0.2357213098384057,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}