{"id":"W2307721566","doi":"10.1093/ofid/ofu052.981","title":"1435Development and Validation of a Diagnostic Real-time PCR Assay for the Rapid and Accurate Detection of Pneumocystis jirovecii from Bronchoalveolar Lavage Fluid Samples","year":2014,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bronchoalveolar lavage; Medicine; Pneumocystis jirovecii; Pathology; Immunology; Virology; Human immunodeficiency virus (HIV); Internal medicine; Lung","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006685814,0.00103158,0.0005684442,0.001174222,0.0004747165,0.00160296,0.001079534,0.001128999,0.0008352376],"category_scores_gemma":[0.007105779,0.0006500094,0.0005784379,0.0004934752,0.0009414483,0.0005046363,0.0005437049,0.0006349728,0.000782057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009284716,"about_ca_system_score_gemma":0.001406499,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002223918,"about_ca_topic_score_gemma":0.002946032,"domain_scores_codex":[0.9894226,0.003188002,0.001060655,0.001947638,0.003931442,0.000449537],"domain_scores_gemma":[0.9947608,0.001746587,0.0007816809,0.0007016294,0.00186716,0.0001421002],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002930433,0.0007604235,0.09612634,0.000272854,0.00009686721,0.0003617905,0.0004652358,0.001158474,0.8633217,0.0003416359,0.0004797095,0.03632203],"study_design_scores_gemma":[0.0001057837,0.002698022,0.1029647,0.0001327522,0.0002325858,0.00235672,0.0004670397,0.02023243,0.858593,0.000192307,0.01196331,0.00006127852],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9035959,0.001629521,0.0874946,0.0002267319,0.000287486,0.001278001,0.001013198,0.0003641192,0.004110453],"genre_scores_gemma":[0.8720178,0.0005500016,0.1201299,0.0004202512,0.00008513049,0.0007570944,0.003986825,0.00008621937,0.001966773],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.006685814,"threshold_uncertainty_score":0.03535837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01205679939448014,"score_gpt":0.2543431432280086,"score_spread":0.2422863438335285,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}