{"id":"W2311981272","doi":"10.1128/genomea.00514-15","title":"Genome Assemblies of Three Soil-Associated <i>Devosia</i> species: <i>D. insulae</i> , <i>D. limi</i> , and <i>D. soli</i>","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Metagenomics; Genome; Strain (injury); Soil water; Ecology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005153651,0.000396377,0.0004880875,0.00007971539,0.000162934,0.00005491075,0.0004073141,0.0001851561,0.000007863789],"category_scores_gemma":[0.00009948929,0.0003961012,0.0001260439,0.0002395511,0.0002592468,0.000005974628,0.0005691008,0.0001142041,0.00001588664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004728253,"about_ca_system_score_gemma":0.0001732638,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005203749,"about_ca_topic_score_gemma":0.0001388236,"domain_scores_codex":[0.9977345,0.00006449971,0.0005748675,0.0006284217,0.0004069727,0.0005906873],"domain_scores_gemma":[0.9984496,0.00001827266,0.0003121274,0.0005570723,0.0004175744,0.0002453724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001179412,0.0002149439,0.03121139,0.00003675161,0.0003949525,0.00000363338,0.0005282122,0.0002275473,0.9658473,0.00007926804,0.001189155,0.0001489591],"study_design_scores_gemma":[0.007818084,0.003954602,0.1896763,0.00006518922,0.0003821804,0.00004114493,0.001984242,0.00007109714,0.06267669,0.002077687,0.7290781,0.002174648],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9795547,0.009911529,0.0002812785,0.0001369336,0.000300616,0.0004040211,0.0005485574,0.00001325341,0.008849186],"genre_scores_gemma":[0.9938339,0.00355482,0.0003347111,0.0006573314,0.0002608976,0.00004643701,0.0004201669,0.00005246172,0.0008392854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9031705,"threshold_uncertainty_score":0.9998491,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03057167718645814,"score_gpt":0.2324002560057511,"score_spread":0.201828578819293,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}