{"id":"W2313132546","doi":"10.3852/12-035","title":"Phylogenetic classification of <i>Pleurothecium</i> and <i>Pleurotheciella</i> gen. nov. and its dactylaria-like anamorph (Sordariomycetes) based on nuclear ribosomal and protein-coding genes","year":2012,"lang":"en","type":"article","venue":"Mycologia","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Phylogenetic tree; Internal transcribed spacer; Clade; Monophyly; Ribosomal DNA; Phylogenetics; Botany; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002029948,0.0002210044,0.000210075,0.00006941664,0.000130471,0.00003177319,0.0001091397,0.0001787177,0.00001760522],"category_scores_gemma":[0.00008497517,0.0001993075,0.00004465368,0.00008412026,0.0001231008,0.000009987287,0.0001102333,0.0000847437,0.00000399094],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007186085,"about_ca_system_score_gemma":0.00003118116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004565136,"about_ca_topic_score_gemma":0.000003538932,"domain_scores_codex":[0.9988418,0.0001140364,0.0002124272,0.00039803,0.0001227088,0.0003109901],"domain_scores_gemma":[0.9993795,0.00004163061,0.0001287679,0.0002340084,0.00004882816,0.0001673131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002063367,0.0001091595,0.04117277,0.00007630329,0.00002170031,0.000003342578,0.000015139,0.000006316876,0.9569877,0.0002570959,0.00014655,0.0009975877],"study_design_scores_gemma":[0.001503918,0.001329034,0.6984454,0.00005848221,0.0001272479,0.00006567176,0.00006142557,0.003568254,0.2811684,0.00001853876,0.01305409,0.0005995571],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955865,0.002786698,0.0000807144,0.00004747982,0.0000631131,0.0004670895,0.0003603816,0.00001628932,0.0005916918],"genre_scores_gemma":[0.9982699,0.0004228714,0.0006296526,0.000391017,0.0001034987,0.00002982394,0.00005849385,0.00002995332,0.00006480524],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6758193,"threshold_uncertainty_score":0.8127524,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01650354863459138,"score_gpt":0.2206983975150284,"score_spread":0.204194848880437,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}