{"id":"W2314507702","doi":"10.1021/bi3015345","title":"Functional Mapping of PilF and PilQ in the <i>Pseudomonas aeruginosa</i> Type IV Pilus System","year":2013,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Pilus; Periplasmic space; Bacterial outer membrane; Pseudomonas aeruginosa; Biogenesis; Lipid-anchored protein; Biology; Cell biology; Membrane protein; Biochemistry; Microbiology; Escherichia coli; Membrane; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001243798,0.000128684,0.0001273224,0.00002528655,0.00003785437,0.00002022227,0.0001917854,0.0002603541,0.0000161039],"category_scores_gemma":[0.0000324316,0.0000993256,0.0000369865,0.0001177803,0.0001351099,0.000001926705,0.0001167439,0.00009843196,0.000007778764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000962095,"about_ca_system_score_gemma":0.00004195389,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004065213,"about_ca_topic_score_gemma":0.000003473406,"domain_scores_codex":[0.9992384,0.00002540892,0.0002065189,0.0002611775,0.00009128061,0.0001772212],"domain_scores_gemma":[0.9994871,0.00001063791,0.0000798746,0.0003151149,0.00007282547,0.00003445986],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002166864,0.00003002423,0.001526634,0.00007428524,0.00001580299,0.000001287673,0.00001537715,0.000001033366,0.9960644,0.00006016222,0.001596312,0.0005929759],"study_design_scores_gemma":[0.0004169849,0.0001120139,0.009712244,0.00003407326,0.000009093425,0.00008529529,0.0004302076,0.00003131423,0.9836761,0.00003514922,0.005296588,0.0001608847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967473,0.001271434,0.00003228695,0.0003107188,0.0001276738,0.0001473147,0.00001017257,0.000009225359,0.001343851],"genre_scores_gemma":[0.9990934,0.0001253266,0.0002280629,0.0001184891,0.0001886072,0.00002240974,0.00005484145,0.000009633125,0.0001592863],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01238829,"threshold_uncertainty_score":0.405038,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009080680859944927,"score_gpt":0.189357460814869,"score_spread":0.1802767799549241,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}