{"id":"W2314548866","doi":"10.1128/microbiolspec.vmbf-0007-2015","title":"Stress Responses, Adaptation, and Virulence of Bacterial Pathogens During Host Gastrointestinal Colonization","year":2016,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Virulence; Biology; Immune system; Microbiology; Gastrointestinal tract; Colonisation resistance; Salmonella; Colonization; Campylobacter; Host (biology); Campylobacter jejuni; Immunology; Bacteria; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001757933,0.000262541,0.0002350829,0.0002898012,0.0002371966,0.0005170238,0.0001929346,0.0003452821,0.0009134467],"category_scores_gemma":[0.0001241541,0.0001074072,0.0001595248,0.0002514825,0.0002204522,0.0003734725,0.0003505925,0.0003340789,0.0003139422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000322717,"about_ca_system_score_gemma":0.0002646905,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007117958,"about_ca_topic_score_gemma":0.001097406,"domain_scores_codex":[0.9998848,0.00002034157,0.000005830843,0.00001940551,0.00003600687,0.0000335731],"domain_scores_gemma":[0.9999247,0.00001079562,0.00002080375,0.000002122842,0.00002180264,0.00001971358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003818228,0.000124736,0.01691014,0.0006989023,0.00002728157,0.0008269078,0.001231186,0.0003704737,0.9171934,0.001098662,0.001135196,0.06000134],"study_design_scores_gemma":[0.00001539552,0.00293658,0.6959091,0.0004964417,0.0000712473,0.003068201,0.004536382,0.001001077,0.2343518,0.00259742,0.05494362,0.00007273962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8803898,0.1010569,0.003580371,0.0007637299,0.0001343502,0.00008556694,0.0004797993,0.00008301376,0.01342659],"genre_scores_gemma":[0.9146587,0.07255061,0.002512789,0.0002780888,0.0001203844,0.00006503589,0.0004836898,0.00001467998,0.009315984],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009134467,"threshold_uncertainty_score":0.003055751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01462658949007929,"score_gpt":0.2003427156257351,"score_spread":0.1857161261356558,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}