{"id":"W2314881324","doi":"10.1021/es502794h","title":"Insertion/Deletion-Based Approach for the Detection of <i>Escherichia coli</i> O157:H7 in Freshwater Environments","year":2014,"lang":"en","type":"article","venue":"Environmental Science & Technology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University Medical Centre; McMaster University","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science","keywords":"Escherichia coli; Biology; TaqMan; Pathogen; Serotype; Microbiology; Polymerase chain reaction; Plasmid; Enterobacteriaceae; Genome; Gene; DNA; Heterologous; Genetics; Virology; Molecular biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005583517,0.0001275996,0.0001220659,0.000143275,0.0002394463,0.000009400758,0.0004937685,0.0001317627,0.000007040057],"category_scores_gemma":[0.0001246495,0.00009792992,0.00004736907,0.00034035,0.001783567,0.000008981157,0.0002432629,0.0001295972,0.000003498735],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001012724,"about_ca_system_score_gemma":0.00002771157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001928209,"about_ca_topic_score_gemma":0.0000610032,"domain_scores_codex":[0.9987577,0.00004185655,0.0001888774,0.0004147466,0.0002455749,0.0003513114],"domain_scores_gemma":[0.9994574,0.00002613687,0.00008065961,0.0003922865,0.000006774654,0.00003679301],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004221073,0.0001310684,0.00961774,0.000005018621,0.000007392655,8.152229e-8,0.00001469902,0.001269013,0.9858579,0.00003895353,0.000008871792,0.003007069],"study_design_scores_gemma":[0.0005784369,0.0004551348,0.02248443,0.000002978106,0.00000709897,9.966665e-7,0.0001610532,0.01305485,0.9364825,0.00007820428,0.02656686,0.0001274334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9230619,0.0002155657,0.07579001,0.0002702306,0.00004185463,0.0004968343,0.0000108984,0.00000980517,0.0001028981],"genre_scores_gemma":[0.9958329,0.00008721236,0.003446184,0.0001540412,0.00002433833,0.0003579335,0.00001321907,0.00001194124,0.00007222642],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.072771,"threshold_uncertainty_score":0.6571626,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00633912571159279,"score_gpt":0.2202496489529489,"score_spread":0.2139105232413561,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}