{"id":"W2314986450","doi":"10.1128/aac.00038-16","title":"Low-Frequency Drug Resistance in HIV-Infected Ugandans on Antiretroviral Treatment Is Associated with Regimen Failure","year":2016,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Fogarty International Center; National Institute of Allergy and Infectious Diseases","keywords":"Viral quasispecies; Sanger sequencing; Drug resistance; Genotyping; Virology; Regimen; Population; HIV drug resistance; Biology; Viral load; Genotype; Medicine; Internal medicine; Genetics; DNA sequencing; Virus; Antiretroviral therapy; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004061874,0.000372991,0.0004351074,0.0009218068,0.0005291846,0.0007833406,0.0002315025,0.0003874841,0.0006391241],"category_scores_gemma":[0.002755887,0.0003635142,0.0001294843,0.0007155685,0.0005258356,0.000330335,0.0004647649,0.000515005,0.00009566326],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001744191,"about_ca_system_score_gemma":0.00013916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001205183,"about_ca_topic_score_gemma":0.001633171,"domain_scores_codex":[0.9995068,0.0001856017,0.00007281079,0.00009002903,0.00007720922,0.00006754156],"domain_scores_gemma":[0.9985123,0.0003145173,0.000850354,0.0001024852,0.0001072504,0.0001130319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001500553,0.00002655513,0.987509,0.00004353996,0.00003170673,0.0004908983,0.0002737699,0.0001194449,0.004884184,0.00002651899,0.00006166508,0.006382567],"study_design_scores_gemma":[0.000008551537,0.0002636139,0.993048,0.00004855864,0.00003588502,0.0038093,0.0003740129,0.0006040442,0.001290153,0.00007823611,0.0004261057,0.0000136032],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991946,0.0004173763,0.0001355778,0.0000155845,0.000002177163,0.000007309192,0.00002970987,0.000003714281,0.0001940405],"genre_scores_gemma":[0.9996188,0.0001296548,0.0001582887,0.00001719905,0.000003291823,0.000004986033,0.00002679324,0.000001866346,0.00003912842],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001205183,"threshold_uncertainty_score":0.002396405,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007521027334667677,"score_gpt":0.2284285495963112,"score_spread":0.2209075222616435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}