{"id":"W2315225973","doi":"10.1016/j.meegid.2016.03.029","title":"Phylogenetic analysis of canine distemper virus in South America clade 1 reveals unique molecular signatures of the local epidemic","year":2016,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":false,"ca_institutions":"Western University","funders":"Universidade Luterana do Brasil","keywords":"Clade; Canine distemper; Biology; Phylogenetic tree; Viral phylodynamics; Virology; Population; Carnivore; Virus; Phylogenetics; Outbreak; Genetics; Demography; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007787281,0.00007602178,0.0002281189,0.0001742614,0.00002412242,9.498898e-7,0.00002853465,0.0001065017,0.00001968202],"category_scores_gemma":[0.00008276016,0.00004591691,0.0001039831,0.0004335143,0.0002324986,0.0000108414,0.0000235554,0.00006499744,6.355515e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000427496,"about_ca_system_score_gemma":0.00003790325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003879544,"about_ca_topic_score_gemma":0.0002275067,"domain_scores_codex":[0.9992946,0.0001372827,0.0002445015,0.0001366257,0.00008935146,0.00009766693],"domain_scores_gemma":[0.999568,0.00003329365,0.0001320903,0.0001649395,0.00006143512,0.00004025939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004646015,0.00003724628,0.6075414,0.00001869439,0.000109942,4.58558e-7,0.00003777515,0.002983193,0.3883013,0.00008671329,0.000008740633,0.0008280423],"study_design_scores_gemma":[0.000341447,0.0001837054,0.9854666,0.00005172724,0.0006288341,0.000001363447,0.00001303954,0.00192089,0.01086345,0.0004637955,0.00001505441,0.00005008887],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982311,0.00163368,0.01569111,0.0001287388,0.00003469083,0.000135994,0.00003120557,0.000005415553,0.00002822393],"genre_scores_gemma":[0.999497,0.0003027056,0.00004031598,0.00011065,0.00001329024,0.000007977762,0.000005304562,0.000005255154,0.00001751449],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3779252,"threshold_uncertainty_score":0.1872437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007838387139342257,"score_gpt":0.2539914927259438,"score_spread":0.2461531055866016,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}