{"id":"W2315942388","doi":"10.1128/genomea.00372-15","title":"Draft Genome Sequences of Paenibacillus polymyxa NRRL B-30509 and Paenibacillus terrae NRRL B-30644, Strains from a Poultry Environment That Produce Tridecaptin A and Paenicidins","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Paenibacillus polymyxa; Biology; Lantibiotics; Paenibacillus; Microbiology; Bacteriocin; Genome; Whole genome sequencing; Gene; Bacteria; Genetics; Antimicrobial; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004209812,0.0004538522,0.0004906323,0.00007855937,0.0001629936,0.00005739165,0.0003165642,0.0001910632,0.00003206706],"category_scores_gemma":[0.00004099113,0.0004186922,0.0001006713,0.00008015617,0.0003796082,0.000008283073,0.0005306906,0.000120131,0.00001273735],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006187167,"about_ca_system_score_gemma":0.0001493124,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00028957,"about_ca_topic_score_gemma":0.0000442458,"domain_scores_codex":[0.9974705,0.0001048098,0.0005163426,0.0009556698,0.000403179,0.0005495282],"domain_scores_gemma":[0.9986894,0.00001640595,0.0002927755,0.0006050434,0.00009398378,0.0003024185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001486254,0.0001335574,0.026661,0.00003197948,0.0003563614,0.000009281928,0.002199818,0.00007017281,0.9681592,0.000009445061,0.00008869023,0.002131896],"study_design_scores_gemma":[0.01557431,0.007627004,0.3952388,0.0001383985,0.000912992,0.000175187,0.02458487,0.0001080345,0.1448359,0.00189232,0.404602,0.004310213],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9712364,0.02557368,0.0001687035,0.0002917098,0.0001507327,0.0005569433,0.001536266,0.000007648513,0.0004779109],"genre_scores_gemma":[0.9924682,0.004750056,0.001236422,0.0002503131,0.0002448924,0.00006222214,0.0004654737,0.00003909563,0.0004832622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8233233,"threshold_uncertainty_score":0.9998265,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03312707104145959,"score_gpt":0.2301290647726414,"score_spread":0.1970019937311818,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}