{"id":"W2315966389","doi":"10.1139/gen-2013-0042","title":"Assembly and comparative analysis of transposable elements from low coverage genomic sequence data in Asparagales","year":2013,"lang":"en","type":"article","venue":"Genome","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Evolutionary Synthesis Center; National Science Foundation","keywords":"Biology; Genome; Transposable element; Genetics; Genome size; Evolutionary biology; Comparative genomics; Phylogenetic tree; Genomics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000423125,0.0002468812,0.0003014211,0.001264712,0.0003156051,0.0005395311,0.000211148,0.0002121676,0.0005384324],"category_scores_gemma":[0.001108006,0.0001316539,0.0003235151,0.001199052,0.0001694636,0.0002326791,0.0002963106,0.0003287312,0.000284798],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002318424,"about_ca_system_score_gemma":0.0002709461,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001177024,"about_ca_topic_score_gemma":0.003168567,"domain_scores_codex":[0.9998125,0.00003758443,0.0000198529,0.00006374678,0.00004215294,0.00002402545],"domain_scores_gemma":[0.9995298,0.0001983798,0.00008568236,0.00005444723,0.00007358243,0.00005807968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005705196,0.00005269521,0.01331105,0.0002316894,0.00004939307,0.0002574846,0.0007306774,0.0009158527,0.96987,0.0002678808,0.00005863615,0.01368413],"study_design_scores_gemma":[0.00004522597,0.0007943945,0.6933258,0.00008291717,0.0002629168,0.001196995,0.001429552,0.01393748,0.276934,0.0008859985,0.0110565,0.00004814642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930298,0.0001847442,0.004890166,0.0000130756,0.000003888587,0.00002141995,0.00143516,0.00003713902,0.0003845575],"genre_scores_gemma":[0.9487414,0.0004180178,0.03040635,0.00004562684,0.00001139851,0.00005680514,0.01916956,0.00009101073,0.001059848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001264712,"threshold_uncertainty_score":0.002340317,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03759124073616816,"score_gpt":0.2686770657646754,"score_spread":0.2310858250285073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}