{"id":"W2316385596","doi":"10.1371/journal.pone.0152832","title":"Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Biology; Plasmid; Campylobacter fetus; Genetics; Pathogenicity island; Horizontal gene transfer; Genome; Mobile genetic elements; Gene; Phylogenetic tree; Campylobacter; Comparative genomics; Genomic island; Genomics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001086283,0.0004624579,0.0003480621,0.0008523616,0.0003415206,0.0003125935,0.0002489556,0.00034256,0.001111771],"category_scores_gemma":[0.0006625822,0.0002002757,0.000384617,0.0005784957,0.0002558137,0.0002144561,0.0005758541,0.0003187122,0.0002586796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005139851,"about_ca_system_score_gemma":0.0004494874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008348433,"about_ca_topic_score_gemma":0.005409491,"domain_scores_codex":[0.9997482,0.00001696005,0.00002824007,0.000069783,0.00006160255,0.00007520334],"domain_scores_gemma":[0.9994352,0.0001030341,0.0001783702,0.00006756945,0.0001118357,0.0001038733],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005942845,0.00008396582,0.0470478,0.0001898384,0.00005764479,0.0006313084,0.0003456115,0.0001743716,0.939437,0.000153985,0.0001214692,0.01116268],"study_design_scores_gemma":[0.00003617051,0.0005937468,0.7791142,0.00004663141,0.0001569561,0.006112066,0.0008618692,0.0009514005,0.2082697,0.0003115046,0.003497508,0.00004812221],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973258,0.0003604289,0.0009191987,0.00003482252,0.000006842243,0.0000224972,0.0006727978,0.00002843769,0.0006291491],"genre_scores_gemma":[0.9937732,0.0001965563,0.003043304,0.00002988626,0.000006304116,0.00003310058,0.002086426,0.00001319274,0.0008181714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008348433,"threshold_uncertainty_score":0.01659966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06468258813779727,"score_gpt":0.2016581761004216,"score_spread":0.1369755879626244,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}