{"id":"W2317262650","doi":"10.1021/ac2024602","title":"FRep: A Fluorescent Protein-Based Bioprobe for <i>in Vivo</i> Detection of Protein–DNA Interactions","year":2011,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"DNA; Förster resonance energy transfer; Chemistry; Linker; Transcription factor; Protein engineering; DNA-binding protein; Computational biology; Fluorescence; Gene; Biochemistry; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008733838,0.0001355329,0.0001579327,0.00002422329,0.00004313139,0.000004869517,0.0001053167,0.0002028569,0.00005140993],"category_scores_gemma":[0.0001144375,0.0001191997,0.000150778,0.0001053886,0.0001275872,0.000002188815,0.00004107249,0.0001307775,0.000001846806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001994486,"about_ca_system_score_gemma":0.00004533958,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003031846,"about_ca_topic_score_gemma":0.0000249156,"domain_scores_codex":[0.999163,0.00001204864,0.0002594407,0.0002870719,0.00007745239,0.0002009304],"domain_scores_gemma":[0.9995242,0.000007153951,0.00008239868,0.0002256666,0.00009982438,0.00006079525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002213123,0.0002425477,0.0001883303,0.0001714462,0.00006582732,0.000001546338,0.00001479542,0.000001924648,0.9987237,0.00002122309,0.00009339247,0.0002539253],"study_design_scores_gemma":[0.0005480082,0.0001340972,0.00008329485,0.00007880211,0.00003291597,0.000002460505,0.00004813154,0.0004724453,0.9955381,0.00006692618,0.002854983,0.0001398487],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913473,0.0002111066,0.002364951,0.0001337684,0.00004381471,0.0005341418,0.00003063851,0.0000183519,0.005315947],"genre_scores_gemma":[0.9976987,0.000007277063,0.0008131149,0.00003166646,0.0000702551,0.0001124082,0.00001514613,0.00001457024,0.00123682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006351462,"threshold_uncertainty_score":0.4860822,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01465816886955018,"score_gpt":0.2416699202829928,"score_spread":0.2270117514134426,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}