{"id":"W2317394466","doi":"10.1373/clinchem.2015.244236","title":"Mass Spectrometry–Based Escherichia coli H Antigen/Flagella Typing: Validation and Comparison with Traditional Serotyping","year":2016,"lang":"en","type":"article","venue":"Clinical Chemistry","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Typing; Serotype; Biology; Escherichia coli; Microbiology; Antigen; Repeatability; Antiserum; Genetics; Chromatography; Chemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004380529,0.0001977678,0.0002728618,0.00001653227,0.0001188758,0.00003638217,0.0001812814,0.0002153178,0.00008423635],"category_scores_gemma":[0.0006219458,0.0001436191,0.00008551154,0.000125688,0.0004172582,0.000006959977,0.00008227327,0.0002062557,0.000008267419],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002582248,"about_ca_system_score_gemma":0.0001631192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001015238,"about_ca_topic_score_gemma":0.000001517742,"domain_scores_codex":[0.998504,0.00008699597,0.0003607207,0.0005384194,0.0002010447,0.0003088067],"domain_scores_gemma":[0.9990009,0.0002103494,0.0001464368,0.0003174796,0.0001324947,0.0001923501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002654271,0.0001213443,0.1473929,0.00005350752,0.00009859714,0.000002620877,0.000002952455,0.000004502057,0.8506751,0.00001870794,0.001015458,0.000348882],"study_design_scores_gemma":[0.002240536,0.0004548006,0.04545427,0.0001117091,0.00003401627,0.000005018909,0.00005331172,0.0002630818,0.9440312,0.0001393065,0.006805296,0.0004074119],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889202,0.0003097407,0.007180957,0.0008420082,0.00004752864,0.0001485377,0.00002239099,0.00002849813,0.002500185],"genre_scores_gemma":[0.9920591,0.000249506,0.006425907,0.0001487922,0.0004476113,0.00002761187,0.00006339487,0.00002664776,0.0005515048],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1019386,"threshold_uncertainty_score":0.5856615,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06173062244154418,"score_gpt":0.33930279439182,"score_spread":0.2775721719502758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}