{"id":"W2318599323","doi":"10.1016/j.gene.2016.04.018","title":"PacBio SMRT assembly of a complex multi-replicon genome reveals chlorocatechol degradative operon in a region of genome plasticity","year":2016,"lang":"en","type":"article","venue":"Gene","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University; University of Toronto; The Scarborough Hospital","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Replicon; Operon; Computational biology; Plasmid; Genetics; Sequence assembly; Whole genome sequencing; Gene; Single molecule real time sequencing; Shotgun sequencing; DNA sequencing; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002260256,0.0005491114,0.000551443,0.0005543177,0.0005279784,0.0006716813,0.000376855,0.0003868413,0.002604785],"category_scores_gemma":[0.0007158605,0.0004521779,0.0007329237,0.0004795326,0.0001773444,0.0004414505,0.0003042308,0.001299535,0.00143335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006211539,"about_ca_system_score_gemma":0.000466754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002813844,"about_ca_topic_score_gemma":0.005095867,"domain_scores_codex":[0.9998063,0.00001966391,0.00001415911,0.00005473974,0.00007672918,0.0000283414],"domain_scores_gemma":[0.9997489,0.00009197108,0.0000372959,0.00004353174,0.00004027471,0.00003804612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001503534,0.00002791302,0.0003373155,0.00005787459,0.000008667782,0.00007336428,0.00006800595,0.0001961584,0.9957876,0.0001415438,0.000241241,0.002909876],"study_design_scores_gemma":[0.00001845329,0.0001024721,0.006955719,0.00001862443,0.00004305499,0.0001910925,0.0000980049,0.00533506,0.980946,0.0002000273,0.006068697,0.00002282006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9313372,0.0007080641,0.05469259,0.0005039584,0.0001825787,0.0001749517,0.005208537,0.002614434,0.004577738],"genre_scores_gemma":[0.888076,0.0005342272,0.07907216,0.000282112,0.00005289396,0.0001804056,0.01714772,0.002072408,0.01258194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002813844,"threshold_uncertainty_score":0.008713841,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07588159319462327,"score_gpt":0.2452521947872169,"score_spread":0.1693706015925937,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}