{"id":"W2319124116","doi":"10.1097/mib.0000000000000574","title":"Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar","year":2015,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Manitoba; University of Toronto","funders":"","keywords":"Pathovar; Inflammatory bowel disease; Escherichia coli; Medicine; Genome; Disease; Microbiology; Biology; Bacteria; Genetics; Internal medicine; Gene; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004233814,0.0004870137,0.000376877,0.0001481959,0.0002028878,0.0000687014,0.0005435396,0.0002320675,0.0000445659],"category_scores_gemma":[0.002025997,0.0005040641,0.0002999103,0.0001988244,0.0004962113,0.00004707113,0.0003009994,0.0001964871,0.00004014188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001479543,"about_ca_system_score_gemma":0.002165043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001892122,"about_ca_topic_score_gemma":0.0001618057,"domain_scores_codex":[0.9966061,0.0005826565,0.0006356381,0.0007051879,0.0007922536,0.0006781711],"domain_scores_gemma":[0.9966465,0.00008400634,0.0004223364,0.000889482,0.0008579767,0.001099736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003477556,0.001813385,0.6733487,0.0008073716,0.0006413815,0.0004407901,0.0002881572,0.001801639,0.3149564,0.000363151,0.001898346,0.0001631233],"study_design_scores_gemma":[0.00324285,0.0007127041,0.9827651,0.000140071,0.0002110106,0.000001077088,0.0005004325,0.0004347555,0.008748259,0.0009446625,0.001500014,0.0007990533],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951282,0.002373784,0.00006801612,0.00006105018,0.0001703713,0.0007907107,0.000718695,0.0001231384,0.0005660254],"genre_scores_gemma":[0.9969047,0.0002058277,0.0004381537,0.0002672642,0.0002761447,0.000423503,0.00129409,0.00009755122,0.00009280026],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3094164,"threshold_uncertainty_score":0.9997411,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02179887172488245,"score_gpt":0.2556267168061471,"score_spread":0.2338278450812646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}