{"id":"W2319124116","doi":"10.1097/mib.0000000000000574","title":"Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar","year":2015,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Manitoba; University of Toronto","funders":"","keywords":"Pathovar; Inflammatory bowel disease; Escherichia coli; Medicine; Genome; Disease; Microbiology; Biology; Bacteria; Genetics; Internal medicine; Gene; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000294553,0.0005311815,0.0003550759,0.001400912,0.0003142324,0.0007721669,0.0004104809,0.0007727889,0.00106322],"category_scores_gemma":[0.0008193315,0.0001029732,0.0003160663,0.001837998,0.0004172587,0.0003348559,0.0008556752,0.0005426441,0.0004920484],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002781482,"about_ca_system_score_gemma":0.0004362504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001157818,"about_ca_topic_score_gemma":0.001123364,"domain_scores_codex":[0.999632,0.00006616217,0.00003319876,0.0001173314,0.00008217063,0.0000690353],"domain_scores_gemma":[0.9992519,0.00009206346,0.0003170924,0.00007364479,0.0001315778,0.0001336948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001527301,0.0004813477,0.2171412,0.0009211012,0.0001950794,0.001312797,0.0006941209,0.001338316,0.7483814,0.002418855,0.001487577,0.02410076],"study_design_scores_gemma":[0.00006899245,0.001244503,0.9309734,0.0001860493,0.000252836,0.005833553,0.001245368,0.003652965,0.02944487,0.001914218,0.0251421,0.00004130317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9836951,0.0009728301,0.007899547,0.0002034602,0.00003704689,0.0001654193,0.003966679,0.0000686925,0.002991231],"genre_scores_gemma":[0.9557253,0.0005255931,0.0275765,0.0002887639,0.00003987514,0.000141942,0.01510287,0.00003925685,0.0005600179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001400912,"threshold_uncertainty_score":0.003556848,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02179887172488245,"score_gpt":0.2556267168061471,"score_spread":0.2338278450812646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}