{"id":"W2319131340","doi":"10.1038/nmicrobiol.2016.9","title":"Slam is an outer membrane protein that is required for the surface display of lipidated virulence factors in Neisseria","year":2016,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Bacterial outer membrane; Virulence; Neisseria; Neisseria meningitidis; Biology; Microbiology; Virulence factor; Membrane protein; Gene; Cell biology; Genome; Escherichia coli; Bacteria; Genetics; Membrane","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002592024,0.0002602818,0.0004344594,0.00008845617,0.0001254419,0.00001064649,0.0004032939,0.001105268,0.000847457],"category_scores_gemma":[0.0000794658,0.0001318345,0.0001274433,0.0001580805,0.0002299975,0.0001608824,0.00008465282,0.0003432136,0.00004199622],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000311056,"about_ca_system_score_gemma":0.00004386473,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000211859,"about_ca_topic_score_gemma":0.0003076448,"domain_scores_codex":[0.99858,0.0002130348,0.0003483011,0.0004389124,0.000007421467,0.000412329],"domain_scores_gemma":[0.9988781,0.0003002819,0.000209495,0.0004743675,0.0001209269,0.00001688335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004497759,0.0000919764,0.004078604,0.00001863729,0.0001325898,1.705897e-7,0.0003494426,2.859274e-7,0.9923741,0.0002470645,0.001750648,0.0005067247],"study_design_scores_gemma":[0.001416274,0.000262743,0.006524108,0.00005551384,0.00003266911,0.00002474046,0.0000653332,7.77735e-7,0.9191174,0.00005978117,0.07225839,0.0001823093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937456,0.0009381736,0.00007923877,0.001906754,0.001611077,0.0007690952,0.0008981657,0.00003800884,0.00001394427],"genre_scores_gemma":[0.9976847,0.00008238745,0.00006076314,0.0002881137,0.00004973111,0.00003475119,0.0001751225,0.0000227357,0.001601682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07325672,"threshold_uncertainty_score":0.927906,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01695091724304599,"score_gpt":0.2638201754492168,"score_spread":0.2468692582061708,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}