{"id":"W2319781286","doi":"10.1139/w11-101","title":"Transcriptional regulation of<i>sdiA</i>by cAMP-receptor protein, LeuO, and environmental signals in<i>Salmonella enterica</i>serovar Typhimurium","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canada Research Chairs","keywords":"Repressor; Biology; Salmonella enterica; Transcription factor; Promoter; cAMP receptor protein; Regulation of gene expression; rpoS; Activator (genetics); Genetics; Microbiology; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001333394,0.0002573657,0.0001531156,0.0001682218,0.0001055107,0.0002740896,0.0001348745,0.0001396213,0.0002622836],"category_scores_gemma":[0.0001747912,0.0001721462,0.0002401819,0.00008291247,0.0002716747,0.00009794853,0.0002464912,0.0002996226,0.0002058996],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005183924,"about_ca_system_score_gemma":0.0002544672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002630808,"about_ca_topic_score_gemma":0.002703843,"domain_scores_codex":[0.9998736,0.00002646744,0.00001082387,0.00002153615,0.00002861507,0.00003885771],"domain_scores_gemma":[0.9998583,0.0000357268,0.00003217511,0.00001282247,0.00002281253,0.00003827411],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006335792,0.00001292611,0.0002813646,0.000007794179,0.000001016213,0.00001972338,0.0000177893,0.00003946635,0.9992272,0.00004354414,0.00001032231,0.0002754559],"study_design_scores_gemma":[0.00002718597,0.0003366155,0.02190139,0.00001052433,0.00001516564,0.0001479591,0.0001695148,0.002762027,0.9735348,0.00008305495,0.0009998815,0.00001181541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983913,0.0002396197,0.0007640923,0.00005306827,0.000006634909,0.000006113338,0.00006999976,0.00002560161,0.0004434487],"genre_scores_gemma":[0.9977931,0.0001363135,0.001227861,0.00002643475,0.000002660159,0.00001135526,0.0002285112,0.0000115509,0.0005622558],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002630808,"threshold_uncertainty_score":0.005231023,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005281900413581844,"score_gpt":0.1749612870939155,"score_spread":0.1696793866803336,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}