{"id":"W2320874112","doi":"10.1097/mib.0000000000000717","title":"Novel Strategies for Applied Metagenomics","year":2016,"lang":"en","type":"review","venue":"Inflammatory Bowel Diseases","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research; North American Society for Pediatric Gastroenterology, Hepatology and Nutrition; Dalhousie University; Nova Scotia Health Research Foundation; Dalhousie Medical Research Foundation; Crohn's and Colitis Foundation of America","keywords":"Metagenomics; Microbiome; Computational biology; Gut microbiome; Biology; DNA sequencing; Inflammatory bowel disease; Human Microbiome Project; Function (biology); Disease; Human microbiome; Bioinformatics; Evolutionary biology; Medicine; DNA; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009364933,0.001923064,0.002418293,0.004708375,0.0007901938,0.005289735,0.003050689,0.002320524,0.00823359],"category_scores_gemma":[0.0073933,0.0008069347,0.002174011,0.004893991,0.002215785,0.004627978,0.005641219,0.004896884,0.004545035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001722834,"about_ca_system_score_gemma":0.003950167,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001404497,"about_ca_topic_score_gemma":0.001945253,"domain_scores_codex":[0.9958468,0.001850725,0.0002417777,0.0009904847,0.0008896036,0.0001805937],"domain_scores_gemma":[0.9973304,0.001117009,0.0002098217,0.0006516404,0.0005483036,0.0001427063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002151034,0.0001467211,0.003700614,0.007604787,0.001443525,0.0004688398,0.000882421,0.005480339,0.01841314,0.1836657,0.02256919,0.7554096],"study_design_scores_gemma":[0.00005309213,0.0001496828,0.002663191,0.002224772,0.0004642166,0.0009939733,0.000488801,0.00644879,0.01000602,0.1940821,0.7822906,0.0001348391],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"review","genre_scores_codex":[0.004016667,0.3101097,0.636762,0.007669681,0.003711947,0.0004972501,0.001944598,0.001643374,0.03364488],"genre_scores_gemma":[0.05638521,0.3024887,0.6078507,0.006868158,0.002994542,0.0019236,0.004482768,0.001094029,0.01591236],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.009364933,"threshold_uncertainty_score":0.04952711,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0265934057654454,"score_gpt":0.3053047347577427,"score_spread":0.2787113289922973,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}