{"id":"W2321552624","doi":"10.1097/tp.0b013e3182029b16","title":"Effects of Sample Timing and Treatment on Gene Expression in Early Acute Renal Allograft Rejection","year":2010,"lang":"en","type":"article","venue":"Transplantation","topic":"Renal Transplantation Outcomes and Treatments","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity; Prevention of Organ Failure; University of British Columbia","funders":"","keywords":"JUNB; Gene expression; Gene expression profiling; Fold change; MALAT1; Biology; Medicine; Immune system; Immunology; Gene; Bioinformatics; Downregulation and upregulation; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000411414,0.000119944,0.0001858778,0.0001560176,0.00003475308,0.000006561793,0.00001702918,0.00007592023,0.00000888911],"category_scores_gemma":[0.000004583614,0.00009010525,0.00004819944,0.00008528717,0.00002183064,0.00007335521,9.993312e-7,0.00008630601,0.000002292026],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002174864,"about_ca_system_score_gemma":0.00001405674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002847474,"about_ca_topic_score_gemma":0.0001250537,"domain_scores_codex":[0.9993661,0.00002609601,0.000185163,0.0001778337,0.0001357421,0.0001090624],"domain_scores_gemma":[0.9996108,0.0001808009,0.00005402503,0.00007980113,0.0000173564,0.00005720283],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001656972,0.0002438752,0.09742407,0.0002037847,0.00007571653,0.0001339299,0.001443053,0.00001747024,0.8947136,0.00004460793,4.412213e-7,0.004042515],"study_design_scores_gemma":[0.004313701,0.0006562088,0.4200261,0.0002448578,0.0002001882,0.00004350919,0.000004207891,0.00003162935,0.5744027,0.00002512663,0.00000513243,0.00004664071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974881,0.00001750472,0.001807299,0.00003497888,0.00007920171,0.0004228247,0.00003440584,0.00002240314,0.00009324438],"genre_scores_gemma":[0.9912727,0.0007964495,0.007585081,0.00002379562,0.0000238503,0.000037339,0.0002017459,0.00001157541,0.00004740981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.322602,"threshold_uncertainty_score":0.3674385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01553559898941584,"score_gpt":0.2861174179907288,"score_spread":0.2705818190013129,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}