{"id":"W2322138869","doi":"10.1371/currents.rrn1040","title":"SeqMonitor: Influenza Analysis Pipeline and Visualization","year":2009,"lang":"en","type":"article","venue":"PLoS Currents","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Killam Trusts; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Metadata; Upload; GenBank; Computer science; World Wide Web; Visualization; Pipeline (software); Data science; Data mining; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001174017,0.0001368312,0.0003210351,0.0003842868,0.0001033854,0.00002914311,0.00005623437,0.00005279516,0.00006606732],"category_scores_gemma":[0.0003729653,0.0001142723,0.00007337789,0.0007671614,0.00005278419,0.0001150746,0.00004622127,0.0001385234,0.00006197838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000555698,"about_ca_system_score_gemma":0.00002672209,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009265283,"about_ca_topic_score_gemma":0.000002626008,"domain_scores_codex":[0.9987271,0.00004019809,0.0002452619,0.0002423641,0.000485884,0.0002591713],"domain_scores_gemma":[0.9993149,0.00003211053,0.00005663131,0.000207479,0.0002340632,0.0001548298],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002857472,0.0008592397,0.9546517,0.0001558178,0.001183226,0.00001796219,0.001044103,0.00002987429,0.004626831,0.0001627467,0.002645917,0.03433688],"study_design_scores_gemma":[0.003628337,0.0005222553,0.9449244,0.0002225584,0.002639016,0.000004660933,0.0001625517,0.02240604,0.007055554,0.0001867368,0.01786509,0.0003828194],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952675,0.002380457,0.0002696567,0.000206828,0.00004715883,0.0003187183,0.00001764623,0.0001067693,0.001385331],"genre_scores_gemma":[0.9982163,0.0003903669,0.0001567191,0.000810048,0.0001674873,0.00001066781,0.0000400038,0.000009991332,0.0001984103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03395406,"threshold_uncertainty_score":0.465989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1201328451399646,"score_gpt":0.441913528702677,"score_spread":0.3217806835627124,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}