{"id":"W2323930444","doi":"10.1186/s12864-016-2597-2","title":"The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":145,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Agriculture and Agri-Food Canada; University of Alberta","funders":"","keywords":"Biology; Brassica; Host (biology); Genome; Pathogen; Genetics; DNA microarray; Alternaria brassicae; Clubroot; Botany; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009133384,0.000141829,0.0001537293,0.000008128691,0.000296087,0.00005815325,0.0004700141,0.00004179349,0.00006398976],"category_scores_gemma":[0.00002647391,0.00003395289,0.00009927482,0.0001500027,0.0001013162,0.00003560804,0.00007566058,0.0000676061,0.00005972573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000560631,"about_ca_system_score_gemma":0.0000563504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004297494,"about_ca_topic_score_gemma":0.002739547,"domain_scores_codex":[0.999021,0.00006268221,0.000207586,0.0002171428,0.0001885932,0.0003030251],"domain_scores_gemma":[0.9991846,0.0003061101,0.0001341251,0.0001726142,0.00005362178,0.0001489277],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002105629,0.00004311917,0.005269956,0.000003116741,0.00002909791,0.000002069873,0.00007072429,0.00003141227,0.9911751,0.00006453061,0.00143793,0.001662391],"study_design_scores_gemma":[0.0002246282,0.0001936825,0.4366389,0.00006832103,0.00005096988,0.00001673879,0.000442774,0.00006169362,0.07610242,0.0001316628,0.485798,0.0002702674],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935689,0.0002800597,0.0000469151,0.003511989,0.00008385049,0.0002971702,0.001970142,0.00001543464,0.000225531],"genre_scores_gemma":[0.9988334,0.0001819325,0.00008275214,0.000202792,0.000115721,0.00000817064,0.00002233874,0.000002192038,0.0005507148],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9150727,"threshold_uncertainty_score":0.2277292,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02135122987617913,"score_gpt":0.1974604223438462,"score_spread":0.1761091924676671,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}