{"id":"W2324105121","doi":"10.1158/1538-7445.am2011-lb-177","title":"Abstract LB-177: HPV16 CpG and de novo-cytosine methylation is differentially associated with low-grade versus high-grade anal intraepithelial neoplasia in HIV-infected men","year":2011,"lang":"en","type":"article","venue":"Cancer Research","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"CpG site; Anal cancer; DNA methylation; Methylation; Men who have sex with men; Epigenetics; Biology; Cancer; Bisulfite sequencing; Medicine; Genetics; Human immunodeficiency virus (HIV); Gene; Virology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001572978,0.0001407118,0.0001341414,0.0005259727,0.000184979,0.0003108774,0.0001536835,0.0002070493,0.003692755],"category_scores_gemma":[0.0005330911,0.00008035545,0.0001239078,0.0004729326,0.0001386497,0.0001120427,0.0001719933,0.0001857135,0.0003369459],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009823916,"about_ca_system_score_gemma":0.00007717834,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001138108,"about_ca_topic_score_gemma":0.00115961,"domain_scores_codex":[0.9998953,0.00002165591,0.00001032363,0.00003221309,0.00002320612,0.00001721722],"domain_scores_gemma":[0.9997612,0.00006072132,0.00008984811,0.00001591278,0.00003169606,0.00004065498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007371696,0.00002812712,0.9741825,0.00007457144,0.00006501887,0.0001043086,0.0001607524,0.00005746805,0.01987247,0.00003250458,0.0001442446,0.004540847],"study_design_scores_gemma":[0.00000564047,0.0001493309,0.9952292,0.00000964454,0.00003779489,0.0005467953,0.0001828038,0.0002164294,0.003201628,0.00003223686,0.0003857743,0.000002605445],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986926,0.0003339229,0.0001214196,0.00001325837,0.000002947947,0.000004510735,0.0004892982,0.000006615647,0.0003353878],"genre_scores_gemma":[0.9993131,0.00003945462,0.00008566721,0.000008420971,0.000003108864,0.000003181754,0.0002774308,0.000002072675,0.0002675075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003692755,"threshold_uncertainty_score":0.01235348,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0839306034603427,"score_gpt":0.3801202625296811,"score_spread":0.2961896590693384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}