{"id":"W2326029347","doi":"10.1016/j.meegid.2016.04.007","title":"Population structure and drug resistance patterns of emerging non-PCV-13 Streptococcus pneumoniae serotypes 22F, 15A, and 8 isolated from adults in Ontario, Canada","year":2016,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"ca_institutions":"Hospital for Sick Children; Mount Sinai Hospital; University of Toronto; Public Health Ontario","funders":"University of Toronto; Public Health Agency of Canada; F. Hoffmann-La Roche; GlaxoSmithKline; Pfizer","keywords":"Serotype; Streptococcus pneumoniae; Biology; Population; Antibiotic resistance; Virology; Conjugate vaccine; Pneumococcal conjugate vaccine; Genome; Genetics; Microbiology; Antibiotics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004593001,0.0001250933,0.0001823764,0.0001152989,0.00009293989,0.00001033891,0.00001395852,0.00009588167,0.00002349072],"category_scores_gemma":[0.00001673269,0.000100435,0.00001677069,0.00009093468,0.00002785426,0.00007420575,0.00002107282,0.0001182094,1.602911e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002254259,"about_ca_system_score_gemma":0.0001136983,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8136898,"about_ca_topic_score_gemma":0.9925954,"domain_scores_codex":[0.9992257,0.00003319215,0.0002581271,0.0002370402,0.0001131285,0.0001328457],"domain_scores_gemma":[0.9995797,0.00002781997,0.000116698,0.0001153927,0.00007898705,0.00008134703],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003929485,0.00001631359,0.9631392,0.00004864959,0.00002023057,0.000001985544,0.0002263085,0.00004432112,0.03394078,0.000006754694,0.0000200108,0.002496185],"study_design_scores_gemma":[0.0009853618,0.00007874442,0.9966316,0.0003354326,0.00004058774,0.000006643545,0.00005229209,0.0004933543,0.0007768117,0.0001855136,0.0002998823,0.0001138151],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986835,0.0001783,0.0003597443,0.0002310348,0.0002072118,0.0002621329,0.0000485491,0.00001291947,0.00001658548],"genre_scores_gemma":[0.9996017,0.0001796586,0.0000147995,0.00002627358,0.00004380088,0.00000847196,0.00002164555,0.000009997362,0.00009366397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1789056,"threshold_uncertainty_score":0.4095621,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003724934189340885,"score_gpt":0.2009433122687843,"score_spread":0.1972183780794434,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}