{"id":"W2328002359","doi":"10.1145/2893488","title":"Parallel Optimal Pairwise Biological Sequence Comparison","year":2016,"lang":"en","type":"review","venue":"ACM Computing Surveys","topic":"Algorithms and Data Compression","field":"Computer Science","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Computer science; Pairwise comparison; Xeon; Xeon Phi; Parallel computing; Sequence (biology); Graphics; Field (mathematics); Supercomputer; Benchmark (surveying); Resource (disambiguation); Field-programmable gate array; Artificial intelligence; Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","open_science","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.004055244,0.0008503921,0.002385854,0.0002167645,0.000398474,0.0004145663,0.007551566,0.0005679964,0.00003596581],"category_scores_gemma":[0.0007378865,0.000533419,0.000569458,0.0006537054,0.0001820148,0.0003816298,0.006667841,0.0007880866,0.0008434234],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001524157,"about_ca_system_score_gemma":0.0003393617,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004882099,"about_ca_topic_score_gemma":0.000001406431,"domain_scores_codex":[0.9921218,0.003385609,0.001302341,0.001680936,0.0005429537,0.0009664099],"domain_scores_gemma":[0.9921988,0.003187487,0.0009283496,0.003238962,0.0001473383,0.0002990732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[7.321018e-7,0.00006177824,0.00005564094,0.0004282346,0.00004795991,0.00005045625,0.00002753533,0.00002620738,2.716291e-7,0.0007789588,0.002546396,0.9959759],"study_design_scores_gemma":[0.000232213,0.000131768,0.0001364392,0.007553781,0.0000306728,0.0001059357,0.000002117855,0.01490506,5.446168e-7,0.0003210355,0.9755732,0.001007232],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000003756153,0.5107988,0.4876159,0.00003323259,0.0007527829,0.0002738974,0.00004555813,0.0003994037,0.00007665821],"genre_scores_gemma":[0.00005958215,0.7959574,0.2031631,0.00004301445,0.0004402095,0.00001832533,0.000192976,0.00004070834,0.00008458816],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9949686,"threshold_uncertainty_score":0.9999346,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.19535979625243,"score_gpt":0.3928243133264426,"score_spread":0.1974645170740126,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}