{"id":"W2330218855","doi":"10.1038/nmicrobiol.2016.27","title":"Global phylogeography and evolutionary history of Shigella dysenteriae type 1","year":2016,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada","funders":"Agence Nationale de la Recherche","keywords":"Dysentery; Smallpox; Outbreak; Plague (disease); Shigella dysenteriae; Phylogeography; Bacillus anthracis; Geography; Coalescent theory; Bacillary dysentery; Biology; Virology; Ancient history; History; Genetics; Phylogenetics; Microbiology; Vaccination; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005059147,0.0002795122,0.0003432665,0.002331914,0.0004837617,0.0006657344,0.0002504885,0.000357482,0.001974999],"category_scores_gemma":[0.0009733305,0.0002311679,0.0003255345,0.001878176,0.0004989383,0.0004616651,0.0007109386,0.0005810507,0.0002557237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004626624,"about_ca_system_score_gemma":0.0002660826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003272278,"about_ca_topic_score_gemma":0.005427888,"domain_scores_codex":[0.9997608,0.00006360721,0.0000100052,0.00008576209,0.00002246151,0.00005741947],"domain_scores_gemma":[0.9993781,0.0002408343,0.0001701422,0.00007122764,0.00005850104,0.00008124977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001189156,0.00009856623,0.8704906,0.0002142149,0.0005731398,0.0002178865,0.002910881,0.006465263,0.08317116,0.001925993,0.0004405925,0.03230264],"study_design_scores_gemma":[0.000009661823,0.00005891851,0.9962903,0.00002238025,0.00004425368,0.0001356735,0.0004827396,0.001385454,0.0004191545,0.0002578516,0.0008852534,0.00000827358],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985889,0.0003038319,0.0002093566,0.0000451685,0.000001150432,0.000002583299,0.0002728955,0.000005099307,0.0005710765],"genre_scores_gemma":[0.9987649,0.0002747505,0.0001908756,0.00001829759,0.000003369378,0.000003905983,0.0005842354,0.00000495748,0.0001547873],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003272278,"threshold_uncertainty_score":0.006607056,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004918004848929305,"score_gpt":0.2400674728122609,"score_spread":0.2351494679633316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}