{"id":"W2330218855","doi":"10.1038/nmicrobiol.2016.27","title":"Global phylogeography and evolutionary history of Shigella dysenteriae type 1","year":2016,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada","funders":"Agence Nationale de la Recherche","keywords":"Dysentery; Smallpox; Outbreak; Plague (disease); Shigella dysenteriae; Phylogeography; Bacillus anthracis; Geography; Coalescent theory; Bacillary dysentery; Biology; Virology; Ancient history; History; Genetics; Phylogenetics; Microbiology; Vaccination; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008208004,0.0001124755,0.0001490075,0.00003540066,0.00002115261,0.00000112566,0.0001402491,0.0003537661,0.00002675831],"category_scores_gemma":[0.0001301085,0.00007748818,0.00005409425,0.00007116682,0.0004992198,0.000001635055,0.0002240719,0.00008158587,0.000003284793],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000550626,"about_ca_system_score_gemma":0.0001067884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008866867,"about_ca_topic_score_gemma":0.00003705778,"domain_scores_codex":[0.999287,0.00008260897,0.0001141101,0.0002799591,0.00003222722,0.0002041007],"domain_scores_gemma":[0.9995492,0.00001988095,0.00005455868,0.0001904736,0.000147166,0.00003874656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001699236,0.00002696218,0.04131435,0.00001267799,0.00008659333,0.000001559363,0.000005698308,6.543262e-8,0.9072163,0.000174477,0.05045929,0.0005320619],"study_design_scores_gemma":[0.0008225795,0.0006284635,0.06560187,0.0000224116,0.00001758907,0.0000805914,0.00001296568,3.214943e-7,0.02539806,0.0002316335,0.9069811,0.0002024069],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9478201,0.04940097,0.0000313467,0.0003284063,0.0005587348,0.0001037686,0.0001315498,0.000008984296,0.001616115],"genre_scores_gemma":[0.9968432,0.001382351,0.0004598311,0.0002591464,0.0001102326,0.000004710962,0.00004184337,0.000007170218,0.000891556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8818183,"threshold_uncertainty_score":0.3159876,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004918004848929305,"score_gpt":0.2400674728122609,"score_spread":0.2351494679633316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}