{"id":"W2331758389","doi":"10.1139/w11-008","title":"Phylogeny of bradyrhizobia from Chinese cowpea miscellany inferred from 16S rRNA,<i>atpD</i>,<i>glnII</i>, and 16S–23S intergenic spacer sequences","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Huazhong Agricultural University; Ministry of Science and Technology of the People's Republic of China","keywords":"Biology; Bradyrhizobium; Rhizobia; Vigna; Botany; Root nodule; 16S ribosomal RNA; Phylogenetics; Intergenic region; Rhizobium; Symbiosis; Bacteria; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001514852,0.0003593332,0.0002776633,0.001401294,0.0004825739,0.0003156041,0.0001784785,0.0001929008,0.0002229948],"category_scores_gemma":[0.0002011573,0.0002114023,0.0003617278,0.0008820894,0.0001624211,0.0001514444,0.0003524719,0.0002168368,0.00007548372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003991248,"about_ca_system_score_gemma":0.0005672995,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01060661,"about_ca_topic_score_gemma":0.0130643,"domain_scores_codex":[0.9998627,0.00001178822,0.00001286162,0.00004636199,0.00002981514,0.00003654055],"domain_scores_gemma":[0.999791,0.00002513861,0.00005313815,0.00001537201,0.00005122479,0.00006411513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000351347,0.0000387682,0.1878016,0.0002383374,0.0001151724,0.0004267621,0.001721679,0.0005783775,0.7911823,0.0001182531,0.00007882194,0.01734868],"study_design_scores_gemma":[0.000006075643,0.00008233129,0.9910625,0.00001248423,0.00006381764,0.00034015,0.0004010753,0.0006832274,0.00592707,0.00002427369,0.001386849,0.00001003979],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991871,0.0002762137,0.0001478664,0.000007956314,0.000001528481,0.000006374042,0.0001135941,0.00000295121,0.0002563931],"genre_scores_gemma":[0.9974703,0.0003072181,0.0005955049,0.00001994385,0.000003120302,0.00001215965,0.001215726,0.000003751414,0.000372466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01060661,"threshold_uncertainty_score":0.02108973,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01476727397584521,"score_gpt":0.1820192368735674,"score_spread":0.1672519628977222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}