{"id":"W2331820269","doi":"10.1103/physrevlett.108.228103","title":"Transition Path from Two Apposed Membranes to a Stalk Obtained by a Combination of Particle Simulations and String Method","year":2012,"lang":"en","type":"article","venue":"Physical Review Letters","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Membrane; String (physics); Stalk; Hourglass; Bilayer; Physics; Fusion; Particle (ecology); Path (computing); Statistical physics; Materials science; Classical mechanics; Chemistry; Quantum mechanics; Computer science; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008613186,0.0000935833,0.0001799172,0.000008681571,0.00002666407,0.000005974519,0.00004506177,0.00001109955,0.000006955022],"category_scores_gemma":[0.00002664399,0.00008011877,0.00006090089,0.00007644224,0.00001898701,0.00001133962,0.00001786518,0.00003674561,0.000001145258],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005066817,"about_ca_system_score_gemma":0.000005081317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000256357,"about_ca_topic_score_gemma":0.000001218196,"domain_scores_codex":[0.999395,0.00009064274,0.0001392055,0.0001494299,0.00009531337,0.000130451],"domain_scores_gemma":[0.9996822,0.00003346939,0.00004927994,0.0001304624,0.00002468226,0.00007988489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001437291,0.0000625558,0.0002153001,0.0001294076,0.00001776904,9.540528e-8,0.0001476788,0.00006637121,0.9955218,0.00004652721,0.00005828352,0.003719767],"study_design_scores_gemma":[0.000570908,0.00006745401,0.001276701,0.00010989,0.0001689518,7.652543e-7,0.00001417226,0.0005712907,0.9954038,0.00001698125,0.001664348,0.0001347792],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914889,0.001245076,0.005999405,0.0008921688,0.00002586681,0.0002745347,0.00006442195,0.00000622269,0.000003424474],"genre_scores_gemma":[0.996506,0.0001781555,0.0007317077,0.002247165,0.0001279547,0.00001487026,0.0001824177,0.0000092617,0.000002497356],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005267697,"threshold_uncertainty_score":0.3267148,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01261879000626109,"score_gpt":0.3110814545797702,"score_spread":0.2984626645735091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}