{"id":"W2332689805","doi":"10.1093/gbe/evv069","title":"Mutation Rates in Plastid Genomes: They Are Lower than You Might Think","year":2015,"lang":"en","type":"letter","venue":"Genome Biology and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":320,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Plastid; Biology; Genome; Mitochondrial DNA; Mitochondrion; Mutation rate; Genetics; Evolutionary biology; Mutation; Chloroplast; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002947373,0.0003430295,0.0003377842,0.0001170055,0.0000945623,0.00002022853,0.0002216951,0.001453258,0.00001747154],"category_scores_gemma":[0.00007112422,0.0002963372,0.00007732859,0.00007137263,0.0001192953,0.000007119605,0.0001305515,0.0004622468,0.00003095679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007596476,"about_ca_system_score_gemma":0.0002107209,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007760472,"about_ca_topic_score_gemma":0.0001564384,"domain_scores_codex":[0.9983633,0.0001389497,0.0002839215,0.0006759504,0.00009184034,0.0004460953],"domain_scores_gemma":[0.9992685,0.00001731688,0.0002252451,0.0003035012,0.0001184259,0.00006706347],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001106712,0.0002687568,0.006522337,0.0006443179,0.0005334031,0.0003197005,0.0008573253,0.0001055907,0.8887179,0.0003203507,0.09942544,0.001178141],"study_design_scores_gemma":[0.001205571,0.001103757,0.004003221,0.00009121592,0.00009548762,0.0002119455,0.0002582854,0.00007000284,0.008426475,0.01342443,0.9701383,0.0009713779],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9192433,0.03341277,0.002674485,0.0384584,0.00236854,0.001125149,0.000890054,0.000078276,0.001748969],"genre_scores_gemma":[0.9730018,0.001515525,0.0001157314,0.01861609,0.001977863,0.00007454331,0.00360462,0.00004801672,0.001045859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8802915,"threshold_uncertainty_score":0.9999489,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01012588516719947,"score_gpt":0.234586681994613,"score_spread":0.2244607968274135,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}