{"id":"W2333437168","doi":"10.3389/fmicb.2016.00478","title":"Detection, Characterization, and Typing of Shiga Toxin-Producing Escherichia coli","year":2016,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Alberta Innovates - Health Solutions","keywords":"Typing; Serotype; Biology; Virulence; STX2; Shiga toxin; Escherichia coli; Variable number tandem repeat; Microbiology; Pulsed-field gel electrophoresis; Polymerase chain reaction; Virology; Genetics; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003830368,0.0003219697,0.001054344,0.0002091923,0.00006621386,0.00001026826,0.0002712455,0.0005006831,0.000006907999],"category_scores_gemma":[0.0003388708,0.0002618854,0.0001327786,0.0002359476,0.0003261797,0.00000463575,0.0003443049,0.0002296839,0.000003076556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005855197,"about_ca_system_score_gemma":0.0001928923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005954843,"about_ca_topic_score_gemma":0.000018377,"domain_scores_codex":[0.9980689,0.0003443972,0.0005344329,0.000648409,0.00003236545,0.0003715086],"domain_scores_gemma":[0.999108,0.00002851764,0.0003321331,0.0003769581,0.000106812,0.000047643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000320686,0.00002442314,0.0003632257,0.002439496,0.0002727536,0.000001352014,0.00003753705,7.606328e-8,0.5930209,0.000004227583,0.0007646244,0.4030393],"study_design_scores_gemma":[0.0002267936,0.0001148964,0.0001179357,0.001386009,0.00005481453,0.00001601844,0.00001724686,8.26103e-7,0.005586854,0.000007717762,0.992187,0.0002839009],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007744398,0.9861582,0.004635905,0.00002238942,0.0007061304,0.0005630091,0.0001215787,0.00000906536,0.00003933779],"genre_scores_gemma":[0.0003550517,0.9970774,0.001307625,0.0000415331,0.0002199173,0.00009623847,0.0002374202,0.00004632663,0.0006184793],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9914224,"threshold_uncertainty_score":0.9999833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01324402308725082,"score_gpt":0.2738638429147689,"score_spread":0.2606198198275181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}