{"id":"W2334064455","doi":"10.1021/acs.jproteome.6b00074","title":"Quantitative Mass Spectrometry Identifies Novel Host Binding Partners for Pathogenic <i>Escherichia coli</i> Type III Secretion System Effectors","year":2016,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Simon Fraser University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology","keywords":"Effector; Biology; Secretion; Stable isotope labeling by amino acids in cell culture; Intracellular; Virulence; Cell biology; Intracellular parasite; Quantitative proteomics; Microtubule; Mutant; Escherichia coli; Proteomics; Genetics; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002268346,0.0003877697,0.0002318771,0.0004043986,0.0001547449,0.0003635724,0.0001847409,0.0003661884,0.0006620677],"category_scores_gemma":[0.0002681518,0.0001138292,0.0002101644,0.0002405422,0.0001739431,0.0001884131,0.0001867076,0.0001860588,0.0002442673],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003129993,"about_ca_system_score_gemma":0.0001298009,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003196848,"about_ca_topic_score_gemma":0.0005152725,"domain_scores_codex":[0.9998426,0.00002510311,0.000009062,0.00003569491,0.00006112346,0.00002629687],"domain_scores_gemma":[0.9998665,0.0000357994,0.00004304286,0.000007168475,0.00002570939,0.00002180428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004773037,0.00001443005,0.0007291354,0.0000165765,0.00000477212,0.00004529255,0.000006063064,0.00004585481,0.9983543,0.00003863366,0.00002331723,0.0006739752],"study_design_scores_gemma":[0.00001045759,0.0001316821,0.02653057,0.000006962719,0.00002296619,0.0008900288,0.00006042181,0.003977241,0.9669312,0.00009928543,0.001329485,0.0000096976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920157,0.0007271518,0.006123165,0.00006152508,0.000007756295,0.000018099,0.0002513727,0.00006874382,0.0007263224],"genre_scores_gemma":[0.9893985,0.0003103754,0.008535445,0.00008914139,0.000005106942,0.0000164417,0.0006298635,0.00001770174,0.0009974516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006620677,"threshold_uncertainty_score":0.002270997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0626545562492794,"score_gpt":0.3865354479597937,"score_spread":0.3238808917105143,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}