{"id":"W2334167823","doi":"10.1093/bioinformatics/btw134","title":"GSP: a web-based platform for designing genome-specific primers in polyploids","year":2016,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Genome; Upload; Polyploid; Primer (cosmetics); Biology; Computational biology; Sequence (biology); Web server; Computer science; Source code; World Wide Web; Genetics; The Internet; Gene; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003209507,0.00300503,0.00135321,0.002444631,0.0009597323,0.001608807,0.002730319,0.002047907,0.04225553],"category_scores_gemma":[0.005002474,0.002489503,0.001949899,0.001793073,0.0009273947,0.002226073,0.002087237,0.002788873,0.03129809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001085077,"about_ca_system_score_gemma":0.001412512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001092081,"about_ca_topic_score_gemma":0.001217345,"domain_scores_codex":[0.9983953,0.0002905264,0.000158956,0.0005449126,0.0004817986,0.0001284977],"domain_scores_gemma":[0.9976319,0.001160535,0.0004106823,0.0003090609,0.0002916293,0.0001961882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003156706,0.0006458913,0.003591772,0.003888629,0.0003933252,0.001441702,0.0008069038,0.01372686,0.51365,0.01011833,0.1869014,0.2616785],"study_design_scores_gemma":[0.0008376696,0.0007883423,0.003538833,0.0004008426,0.0002623904,0.001440644,0.0001799847,0.0481907,0.5659172,0.0160469,0.3620552,0.0003413275],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01407647,0.00122726,0.7110225,0.0006832819,0.0004021338,0.001051748,0.03400875,0.2292591,0.0082688],"genre_scores_gemma":[0.03578244,0.0007052623,0.8842814,0.0007574663,0.00009389831,0.002314918,0.04404801,0.02292668,0.009089882],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.04225553,"threshold_uncertainty_score":0.1413588,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02222148136027761,"score_gpt":0.2309668739902974,"score_spread":0.2087453926300198,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}