{"id":"W2335821408","doi":"10.1093/infdis/jiv415","title":"Genes Required for Free Phage Production are Essential for<i>Pseudomonas aeruginosa</i>Chronic Lung Infections","year":2015,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Leverhulme Trust; Cystic Fibrosis Canada","keywords":"Biology; Prophage; Microbiology; Pseudomonas aeruginosa; Mutant; Virulence; Transcriptome; Mutagenesis; Gene; Genetics; Virology; Bacteriophage; Gene expression; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009250436,0.0004656013,0.0003817573,0.0002190292,0.0001599854,0.0003945032,0.0001552464,0.0001802537,0.001588134],"category_scores_gemma":[0.0002954426,0.0001776133,0.0002028695,0.0001536096,0.0002039432,0.0001543198,0.0003299133,0.000389615,0.000584034],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002028581,"about_ca_system_score_gemma":0.0002324458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006563978,"about_ca_topic_score_gemma":0.001023707,"domain_scores_codex":[0.9998623,0.00001528386,0.00001250555,0.00003250011,0.00004132672,0.00003606812],"domain_scores_gemma":[0.9996897,0.00006287405,0.0001234119,0.00002757543,0.00002928235,0.00006707604],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007264473,0.000006741789,0.0007522025,0.00002460815,0.00000182774,0.00007258434,0.00001757942,0.00002209652,0.9983767,0.00001728423,0.00003185585,0.0006038537],"study_design_scores_gemma":[0.00002749969,0.0003658312,0.1717655,0.00004397984,0.00003892334,0.001404291,0.0002126569,0.001266477,0.8211488,0.0001429885,0.00355364,0.00002943355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967038,0.0004000567,0.001255998,0.00004225592,0.000009934755,0.0000089046,0.0008499122,0.0001141809,0.0006148661],"genre_scores_gemma":[0.9957643,0.0001720792,0.001280282,0.00004732931,0.000005237211,0.0000183874,0.00133984,0.00006968845,0.001302919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001588134,"threshold_uncertainty_score":0.00531286,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01245747705077865,"score_gpt":0.2616893292909591,"score_spread":0.2492318522401805,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}