{"id":"W2336144286","doi":"10.1128/genomea.00185-16","title":"Draft Whole-Genome Sequences of <i>Escherichia fergusonii</i> Strains Isolated from Beef Trim (GTA-EF02), Ground Beef (GTA-EF03), and Chopped Kale (GTA-EF04)","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Government of Canada; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Biology; Escherichia coli; Microbiology; Food science; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003416417,0.0005976828,0.0006769556,0.0001003535,0.0002932845,0.00008080141,0.0005873434,0.0003216825,0.0001236051],"category_scores_gemma":[0.00004467805,0.0004902832,0.000209072,0.0002146862,0.0004028399,0.00001501012,0.0004899892,0.0001454133,0.00005089525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008115562,"about_ca_system_score_gemma":0.0002053674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002810966,"about_ca_topic_score_gemma":0.0001255075,"domain_scores_codex":[0.996765,0.0001285616,0.000817464,0.001089125,0.0003972252,0.0008026667],"domain_scores_gemma":[0.9982851,0.00003750448,0.0004252662,0.0007520285,0.0002419324,0.00025821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001737945,0.0001689544,0.006703691,0.00003611735,0.0006341509,0.000007571756,0.0005125045,0.00001852132,0.9895348,0.00001793726,0.0002430353,0.00194891],"study_design_scores_gemma":[0.01208049,0.005440233,0.2485622,0.0002167417,0.0007671441,0.0000373674,0.001852707,0.0000450807,0.1273022,0.001733014,0.5985095,0.003453296],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9822264,0.01106999,0.0007864612,0.0005510932,0.0003313041,0.000579225,0.003751922,0.0000178849,0.0006857121],"genre_scores_gemma":[0.9909387,0.004514953,0.0008262874,0.0004761366,0.0004111725,0.00007299401,0.0008293312,0.00007002195,0.001860368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8622326,"threshold_uncertainty_score":0.9997549,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01762397139706683,"score_gpt":0.2354051711315632,"score_spread":0.2177811997344964,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}