{"id":"W2336957559","doi":"10.1186/s13059-016-0924-1","title":"JBrowse: a dynamic web platform for genome visualization and analysis","year":2016,"lang":"en","type":"article","venue":"Genome biology","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":842,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Cancer Research; University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; University of Waterloo","keywords":"Plug-in; Visualization; HTML5; JavaScript; Computer science; Annotation; Web application; Scalability; Genome browser; World Wide Web; Genome; Interactive visualization; Information retrieval; Biology; Genomics; Data mining; Database; Operating system; Artificial intelligence; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00418205,0.003116581,0.002118924,0.00562419,0.001483984,0.004572047,0.005280667,0.002342454,0.07215558],"category_scores_gemma":[0.007031052,0.002731238,0.002287035,0.00333956,0.0006394308,0.004289662,0.004951527,0.005611981,0.08486713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007096985,"about_ca_system_score_gemma":0.001802359,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003557411,"about_ca_topic_score_gemma":0.003733715,"domain_scores_codex":[0.998019,0.0002778624,0.0002174898,0.0004208493,0.0008730927,0.0001916392],"domain_scores_gemma":[0.9967821,0.0009299982,0.0003601334,0.0007180492,0.0007007911,0.0005088542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001351799,0.0002338417,0.002130709,0.002571743,0.0005237155,0.0007228011,0.0005772921,0.001556582,0.08006075,0.005970701,0.7667636,0.1375364],"study_design_scores_gemma":[0.0005627531,0.0001068497,0.005888501,0.0007843708,0.000151141,0.001441342,0.0001504807,0.01900807,0.06726192,0.01413548,0.8899066,0.0006024697],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003099181,0.001405987,0.2871243,0.0008867852,0.0006604536,0.0004531686,0.1062353,0.5921803,0.007954631],"genre_scores_gemma":[0.01815996,0.002053228,0.6030932,0.001179697,0.000345645,0.002229719,0.2023078,0.1534484,0.01718229],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.07215558,"threshold_uncertainty_score":0.2413844,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0145537033861647,"score_gpt":0.3038063358592123,"score_spread":0.2892526324730476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}