{"id":"W2337604972","doi":"10.1101/042325","title":"Transposable Element Evolution in the Allotetraploid <i>Capsella bursa-pastoris</i>","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"China Scholarship Council; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Biology; Transposable element; Ploidy; Genetics; Genome; Population; Genome evolution; Evolutionary biology; Outcrossing; Retrotransposon; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001403999,0.000228705,0.0001858006,0.0003865884,0.0001427836,0.0003344746,0.0002090447,0.00022522,0.0006632974],"category_scores_gemma":[0.0002058093,0.0001376342,0.0002645133,0.0004272128,0.00009670528,0.0001552979,0.0001673469,0.0003448691,0.0002040408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003742854,"about_ca_system_score_gemma":0.0001407722,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002316051,"about_ca_topic_score_gemma":0.002450808,"domain_scores_codex":[0.9999182,0.000007382737,0.000008776018,0.00003762405,0.00001795642,0.000009960553],"domain_scores_gemma":[0.9998242,0.00004067992,0.00006084712,0.00002628673,0.00002047943,0.00002738523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004571752,0.000007028287,0.002453353,0.00002460132,0.000009804337,0.00002734326,0.00001838955,0.0001474189,0.9954562,0.00002550788,0.00001060727,0.001773942],"study_design_scores_gemma":[0.00002205959,0.0006290114,0.4226185,0.00003405479,0.0001367781,0.001285362,0.0003027265,0.005369571,0.5630124,0.0001598537,0.006396241,0.00003344841],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972519,0.0002641382,0.001160934,0.00002197702,0.000003572784,0.000008846226,0.0007588793,0.00005252757,0.0004771751],"genre_scores_gemma":[0.9936428,0.0002100012,0.002626448,0.00003717733,0.000002119389,0.00001360017,0.002615563,0.0000262619,0.0008261275],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002316051,"threshold_uncertainty_score":0.004605174,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01132695699840352,"score_gpt":0.1902184047270942,"score_spread":0.1788914477286907,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}