{"id":"W2339263538","doi":"10.1016/j.micinf.2016.03.014","title":"Resilience of the intestinal microbiota following pathogenic bacterial infection is independent of innate immunity mediated by NOD1 or NOD2","year":2016,"lang":"en","type":"article","venue":"Microbes and Infection","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"NOD1; NOD2; Biology; Dysbiosis; Immunology; Innate immune system; Immune system; Acquired immune system; Nod; Inflammation; Pattern recognition receptor; Innate lymphoid cell; Immunity; Gut flora; Inflammasome; Inflammatory bowel disease; Disease; Medicine; Genetics; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002363342,0.0001307542,0.0001577717,0.00004545064,0.000116231,0.00001140043,0.00008694993,0.0001651218,0.00004330323],"category_scores_gemma":[0.0001029168,0.00007870271,0.0001025088,0.0001338538,0.0001168151,0.00001269742,0.0001459897,0.00008818619,0.000002155919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002694999,"about_ca_system_score_gemma":0.00008924223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009149112,"about_ca_topic_score_gemma":0.0004218878,"domain_scores_codex":[0.9991485,0.0001092067,0.000301876,0.0002186619,0.00005604244,0.0001656965],"domain_scores_gemma":[0.999427,0.00001878175,0.0002160975,0.0002196282,0.00008372379,0.00003478143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001172323,0.00006813528,0.0726836,0.0000469498,0.00002753074,1.30512e-7,0.00005733153,2.595562e-7,0.924744,0.00000142241,0.0007153226,0.001538116],"study_design_scores_gemma":[0.0006717333,0.0003112535,0.1842405,0.0001107999,0.00002270067,0.00003119923,0.000007233646,0.000001104929,0.8089216,0.000003762649,0.005584089,0.00009400943],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988161,0.0001721211,0.0002943359,0.00008715695,0.0003373665,0.0001729142,0.0000828261,0.00000656438,0.00003060416],"genre_scores_gemma":[0.9988033,0.0008115683,0.00004303936,0.00007677922,0.00004218422,0.000003819393,0.00003738707,0.00001131143,0.0001706274],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1158224,"threshold_uncertainty_score":0.3209403,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006632694433420296,"score_gpt":0.235127294243692,"score_spread":0.2284945998102717,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}