{"id":"W2339290896","doi":"10.1093/jac/dkw063","title":"Characterization of a genomic island harbouring a new<i>vanD</i>allele from<i>Enterococcus faecium</i>N15-508 isolated in Canada","year":2016,"lang":"en","type":"letter","venue":"Journal of Antimicrobial Chemotherapy","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"ca_institutions":"Ste. Anne's Hospital; Public Health Agency of Canada","funders":"","keywords":"Enterococcus faecium; Allele; Microbiology; Enterococcus; Biology; Genetics; Medicine; Antibiotics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006893552,0.0003592931,0.0006500311,0.0001149913,0.00002539134,0.00003168614,0.0004116609,0.0005745999,0.000125189],"category_scores_gemma":[0.00001172541,0.0002882328,0.0002122796,0.000082855,0.00004014903,0.00001738079,0.00005400038,0.0005425646,0.000001342983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001705667,"about_ca_system_score_gemma":0.0009110688,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02342066,"about_ca_topic_score_gemma":0.01722723,"domain_scores_codex":[0.9981303,0.00006328474,0.000933103,0.0003241281,0.0002144048,0.0003347386],"domain_scores_gemma":[0.9982973,0.00001321709,0.001206724,0.0002362409,0.000168723,0.00007780736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005820343,0.00001353947,0.001190636,0.00004494979,0.0001481313,0.00003296428,0.00004390183,0.000001612224,0.9066819,3.326806e-8,0.0903261,0.0009342254],"study_design_scores_gemma":[0.00207365,0.0001176648,0.002755393,0.0002267612,0.00002790075,0.00005632402,0.000001834959,0.000006639846,0.7935714,0.000009649103,0.2008419,0.0003108699],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9567966,0.0001051326,0.0007922053,0.04122626,0.0004899903,0.0001719567,0.0004040863,0.000002889307,0.00001091085],"genre_scores_gemma":[0.8464867,0.002160708,0.0002861344,0.1397619,0.008317881,0.000002022576,0.002190833,0.0001337136,0.0006601313],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1131105,"threshold_uncertainty_score":0.999957,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003978853261444428,"score_gpt":0.1774635758958561,"score_spread":0.1734847226344116,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}