{"id":"W2340172603","doi":"10.1128/aem.03821-15","title":"Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Wellcome Trust","keywords":"Salmonella enterica; Serotype; Salmonella; Microbiology; Biology; Enterobacteriaceae; Epidemiology; Virology; Genetics; Bacteria; Gene; Escherichia coli; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003824063,0.0003228801,0.0002175075,0.001562585,0.0001574268,0.0004884944,0.000161551,0.000257307,0.0006879173],"category_scores_gemma":[0.0007675052,0.0001606184,0.000356083,0.001689979,0.0003010374,0.0003220261,0.0005086944,0.0002498845,0.00009813552],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003785367,"about_ca_system_score_gemma":0.0002605439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006294299,"about_ca_topic_score_gemma":0.006658548,"domain_scores_codex":[0.999752,0.00005599228,0.00002071926,0.0001060903,0.00003147077,0.00003375059],"domain_scores_gemma":[0.9994308,0.00009329712,0.0002666104,0.00004132622,0.00009510912,0.0000728338],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002368617,0.00003245902,0.9667472,0.00008093512,0.0001835759,0.0001591824,0.0006280693,0.002267034,0.01772737,0.0002398442,0.0001807869,0.01151657],"study_design_scores_gemma":[0.000004458364,0.0001461579,0.996793,0.00001979479,0.00007129887,0.0002655773,0.0004895267,0.000985841,0.0004280952,0.00009048713,0.0006977388,0.000008020304],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978131,0.0003476331,0.0007220313,0.00003064025,0.00000233726,0.000007221118,0.0006028257,0.00001170935,0.0004625127],"genre_scores_gemma":[0.9971709,0.0004261165,0.0009069074,0.00002064109,0.000005423909,0.000008860341,0.001324618,0.000005804473,0.0001306124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006294299,"threshold_uncertainty_score":0.01251537,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259901914655816,"score_gpt":0.1938061288813828,"score_spread":0.1812071097348246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}