{"id":"W2340172603","doi":"10.1128/aem.03821-15","title":"Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Wellcome Trust","keywords":"Salmonella enterica; Serotype; Salmonella; Microbiology; Biology; Enterobacteriaceae; Epidemiology; Virology; Genetics; Bacteria; Gene; Escherichia coli; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002708868,0.0002275523,0.0005105017,0.000009672191,0.000071826,0.000001530152,0.0002269755,0.000261253,0.0004954395],"category_scores_gemma":[0.00001742156,0.00008368592,0.00009709627,0.00005799486,0.0006066629,0.0000236374,0.0002426263,0.00005865208,0.000124056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005423156,"about_ca_system_score_gemma":0.000003183781,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006376728,"about_ca_topic_score_gemma":0.00002090769,"domain_scores_codex":[0.99836,0.0001764445,0.0004461003,0.0005240621,0.00002342686,0.0004699954],"domain_scores_gemma":[0.9990849,0.0004967111,0.0002010991,0.0001024955,0.000003231841,0.0001114871],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000569896,0.00004431965,0.2821889,0.000002291858,0.00002378175,0.000001003742,0.000007190972,4.102878e-7,0.6968012,0.0004894391,0.0002048445,0.02017962],"study_design_scores_gemma":[0.0004365673,0.0003253684,0.9706656,0.000007504157,0.00002289259,0.0001446776,0.0001005517,0.00000130229,0.006236076,0.003112386,0.01868435,0.0002627026],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972883,0.0007383418,0.00003909898,0.0007168881,0.0001216583,0.0001571832,0.0004152681,0.00002807163,0.0004952275],"genre_scores_gemma":[0.9977636,0.0007410011,0.0001903346,0.0009493821,0.0001162072,0.000014704,0.0001498239,0.00000187506,0.00007309132],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6905652,"threshold_uncertainty_score":0.5424715,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259901914655816,"score_gpt":0.1938061288813828,"score_spread":0.1812071097348246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}